Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes
Authors
Keywords
Phylogenetic analysis, Archaea, Eukaryota, Sequence alignment, RNA polymerase, Phylogenetics, Archaean biology, Protein structure comparison
Journal
PLoS Genetics
Volume 13, Issue 6, Pages e1006810
Publisher
Public Library of Science (PLoS)
Online
2017-06-13
DOI
10.1371/journal.pgen.1006810
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Asgard archaea illuminate the origin of eukaryotic cellular complexity
- (2017) Katarzyna Zaremba-Niedzwiedzka et al. NATURE
- Contentious relationships in phylogenomic studies can be driven by a handful of genes
- (2017) Xing-Xing Shen et al. Nature Ecology & Evolution
- LokiarchaeotaMarks the Transition between the Archaeal and Eukaryotic Selenocysteine Encoding Systems
- (2016) Marco Mariotti et al. MOLECULAR BIOLOGY AND EVOLUTION
- Are There Rab GTPases in Archaea?
- (2016) Jaroslaw Surkont et al. MOLECULAR BIOLOGY AND EVOLUTION
- Tracing the Archaeal Origins of Eukaryotic Membrane-Trafficking System Building Blocks
- (2016) Christen M. Klinger et al. MOLECULAR BIOLOGY AND EVOLUTION
- Arguments Reinforcing the Three-Domain View of Diversified Cellular Life
- (2016) Arshan Nasir et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Anaerobic Fungi: A Potential Source of Biological H2 in the Oceanic Crust
- (2016) Magnus Ivarsson et al. Frontiers in Microbiology
- Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea
- (2016) Brett J. Baker et al. Nature Microbiology
- Lokiarchaeon is hydrogen dependent
- (2016) Filipa L. Sousa et al. Nature Microbiology
- Metabolic traits of an uncultured archaeal lineage -MSBL1- from brine pools of the Red Sea
- (2016) Romano Mwirichia et al. Scientific Reports
- Archaeal ancestors of eukaryotes: not so elusive any more
- (2015) Eugene V. Koonin BMC BIOLOGY
- The evolutionary and functional diversity of classical and lesser-known cytoplasmic and organellar translational GTPases across the tree of life
- (2015) Gemma Atkinson BMC GENOMICS
- Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling
- (2015) Cindy J. Castelle et al. CURRENT BIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- Steps on the road to eukaryotes
- (2015) T. Martin Embley et al. NATURE
- Complex archaea that bridge the gap between prokaryotes and eukaryotes
- (2015) Anja Spang et al. NATURE
- Rooting the tree of life: the phylogenetic jury is still out
- (2015) Richard Gouy et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Origin of eukaryotes from within archaea, archaeal eukaryome and bursts of gene gain: eukaryogenesis just made easier?
- (2015) Eugene V. Koonin PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The two-domain tree of life is linked to a new root for the Archaea
- (2015) Kasie Raymann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Open Questions on the Origin of Eukaryotes
- (2015) Purificación López-García et al. TRENDS IN ECOLOGY & EVOLUTION
- Lokiarchaeota: eukaryote-like missing links from microbial dark matter?
- (2015) Arshan Nasir et al. TRENDS IN MICROBIOLOGY
- The universal tree of life: an update
- (2015) Patrick Forterre Frontiers in Microbiology
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- Archaeal “Dark Matter” and the Origin of Eukaryotes
- (2014) Tom A. Williams et al. Genome Biology and Evolution
- Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota
- (2014) Céline Petitjean et al. Genome Biology and Evolution
- The Relative Ages of Eukaryotes and Akaryotes
- (2014) David Penny et al. JOURNAL OF MOLECULAR EVOLUTION
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Taxon-Rich Phylogenomic Analyses Resolve the Eukaryotic Tree of Life and Reveal the Power of Subsampling by Sites
- (2014) Laura A. Katz et al. SYSTEMATIC BIOLOGY
- From Dandruff to Deep-Sea Vents: Malassezia-like Fungi Are Ecologically Hyper-diverse
- (2014) Anthony Amend PLoS Pathogens
- From archaeon to eukaryote: the evolutionary dark ages of the eukaryotic cell
- (2013) Joran Martijn et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Genome reduction as the dominant mode of evolution
- (2013) Yuri I. Wolf et al. BIOESSAYS
- Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
- (2013) Jun Meng et al. ISME Journal
- Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
- (2013) Sergey Nurk et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- The effects of model choice and mitigating bias on the ribosomal tree of life
- (2013) Erica Lasek-Nesselquist et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Insights into the phylogeny and coding potential of microbial dark matter
- (2013) Christian Rinke et al. NATURE
- Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces
- (2013) William Orsi et al. PLoS One
- The Common Ancestor of Archaea and Eukarya Was Not an Archaeon
- (2013) Patrick Forterre ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge
- (2013) Steffen L. Jørgensen et al. Frontiers in Microbiology
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Phylogenomics of Prokaryotic Ribosomal Proteins
- (2012) Natalya Yutin et al. PLoS One
- A congruent phylogenomic signal places eukaryotes within the Archaea
- (2012) T. A. Williams et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Murein and pseudomurein cell wall binding domains of bacteria and archaea—a comparative view
- (2011) Ganesh Ram R. Visweswaran et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Easyfig: a genome comparison visualizer
- (2011) M. J. Sullivan et al. BIOINFORMATICS
- Phylogeny and evolution of the Archaea: one hundred genomes later
- (2011) Celine Brochier-Armanet et al. CURRENT OPINION IN MICROBIOLOGY
- Evaluating Phylogenetic Congruence in the Post-Genomic Era
- (2011) Jessica W. Leigh et al. Genome Biology and Evolution
- A Long-Branch Attraction Artifact Reveals an Adaptive Radiation in Pseudomonas
- (2011) Josselin Bodilis et al. MOLECULAR BIOLOGY AND EVOLUTION
- The archaeal ‘TACK’ superphylum and the origin of eukaryotes
- (2011) Lionel Guy et al. TRENDS IN MICROBIOLOGY
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- The energetics of genome complexity
- (2010) Nick Lane et al. NATURE
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Fungal Diversity in Deep-Sea Hydrothermal Ecosystems
- (2009) T. Le Calvez et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
- (2009) Nicolas Lartillot et al. BIOINFORMATICS
- SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building
- (2009) M. Gouy et al. MOLECULAR BIOLOGY AND EVOLUTION
- Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
- (2008) Céline Brochier-Armanet et al. NATURE REVIEWS MICROBIOLOGY
- A korarchaeal genome reveals insights into the evolution of the Archaea
- (2008) J. G. Elkins et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The archaebacterial origin of eukaryotes
- (2008) C. J. Cox et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More