Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins

Biochemical and functional characterization of the periplasmic domain of the outer membrane protein A from enterohemorrhagic Escherichia coli

(2016) Haiguang Wang et al.   MICROBIOLOGICAL RESEARCH

One-Step Purification and Porin Transport Activity of the Major Outer Membrane Proteins P2 from Haemophilus influenzae, FomA from Fusobacterium nucleatum and PorB from Neisseria meningitidis

(2015) Christof Kattner et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

IR-spectroscopic characterization of an elongated OmpG mutant

(2015) Filiz Korkmaz et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Oep23 forms an ion channel in the chloroplast outer envelope

(2015) Tom Goetze et al.   BMC PLANT BIOLOGY

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

(2015) Zachary Chiang et al.   BRIEFINGS IN BIOINFORMATICS

The β-barrel membrane protein insertase machinery from Gram-negative bacteria

(2015) Nicholas Noinaj et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Transcription of TP0126, Treponema pallidum Putative OmpW Homolog, Is Regulated by the Length of a Homopolymeric Guanosine Repeat

(2015) Lorenzo Giacani et al.   INFECTION AND IMMUNITY

Biogenesis of beta-barrel proteins in evolutionary context

(2015) Thomas Ulrich et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Structure of the Tripartite Multidrug Efflux Pump AcrAB-TolC Suggests an Alternative Assembly Mode

(2015) Jin-Sik Kim et al.   MOLECULES AND CELLS

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The LysE Superfamily of Transport Proteins Involved in Cell Physiology and Pathogenesis

(2015) Brian V. Tsu et al.   PLoS One

Type IV Pilus Secretins Have Extracellular C Termini

(2015) Joshua A. Lieberman et al.   mBio

Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth

(2015) Christopher R. Beckwith et al.   Frontiers in Microbiology

MixtureTree Annotator: A Program for Automatic Colorization and Visual Annotation of MixtureTree

(2015) Shu-Chuan Chen et al.   PLoS One

Voltage-dependent anion channels: the wizard of the mitochondrial outer membrane

(2014) Barbara Mertins et al.   BIOLOGICAL CHEMISTRY

Reliability of Nine Programs of Topological Predictions and Their Application to Integral Membrane Channel and Carrier Proteins

(2014) Abhinay Reddy et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Establishing homology between mitochondrial calcium uniporters, prokaryotic magnesium channels and chlamydial IncA proteins

(2014) A. Lee et al.   MICROBIOLOGY-SGM

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Structure of the oligogalacturonate-specific KdgM porin

(2014) C. A. J. Hutter et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Dual Roles of Pseudomonas aeruginosa AlgE in Secretion of the Virulence Factor Alginate and Formation of the Secretion Complex

(2013) Zahid U. Rehman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Role of the Central Arginine R133 toward the Ion Selectivity of the Phosphate Specific Channel OprP: Effects of Charge and Solvation

(2013) Niraj Modi et al.   BIOCHEMISTRY

Topological and phylogenetic analyses of bacterial holin families and superfamilies

(2013) Bhaskara L. Reddy et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters

(2013) Wei Hao Zheng et al.   BMC MICROBIOLOGY

The transporter-opsin-G protein-coupled receptor (TOG) superfamily

(2013) Daniel C. Yee et al.   FEBS Journal

Identification of a molecular signature unique to metal-reducingGammaproteobacteria

(2013) Seng K. Wee et al.   FEMS MICROBIOLOGY LETTERS

The Sinorhizobium meliloti Essential Porin RopA1 Is a Target for Numerous Bacteriophages

(2013) M. B. Crook et al.   JOURNAL OF BACTERIOLOGY

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Identification and Characterization of a Novel Porin Family Highlights a Major Difference in the Outer Membrane of Chlamydial Symbionts and Pathogens

(2013) Karin Aistleitner et al.   PLoS One

Wzi Is an Outer Membrane Lectin that Underpins Group 1 Capsule Assembly in Escherichia coli

(2013) Simon R. Bushell et al.   STRUCTURE

Fibrinolytic and coagulative activities of Yersinia pestis

(2013) Timo K. Korhonen et al.   Frontiers in Cellular and Infection Microbiology

BioV Suite - a collection of programs for the study of transport protein evolution

(2012) Vamsee S. Reddy et al.   FEBS Journal

The major facilitator superfamily (MFS) revisited

(2012) Vamsee S. Reddy et al.   FEBS Journal

Phylogenetic Characterization of Transport Protein Superfamilies: Superiority of SuperfamilyTree Programs over Those Based on Multiple Alignments

(2012) Jonathan S. Chen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

The Amino Acid-Polyamine-Organocation Superfamily

(2012) Foon H. Wong et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

MspA Nanopores from Subunit Dimers

(2012) Mikhail Pavlenok et al.   PLoS One

The OmpA family of proteins: Roles in bacterial pathogenesis and immunity

(2012) Anthony W. Confer et al.   VETERINARY MICROBIOLOGY

Substrate Specificity within a Family of Outer Membrane Carboxylate Channels

(2012) Elif Eren et al.   PLOS BIOLOGY

Topology Prediction of Helical Transmembrane Proteins: How Far Have We Reached?

(2011) Gabor E. Tusnady et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Evolution of the Oligopeptide Transporter Family

(2011) Kenny M. Gomolplitinant et al.   JOURNAL OF MEMBRANE BIOLOGY

Bacterial outer membrane channel for divalent metal ion acquisition

(2011) T. H. Hohle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structures of sequential open states in a symmetrical opening transition of the TolC exit duct

(2011) Xue-Yuan Pei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Review of Meningococcal Group B Vaccines

(2010) Dan M. Granoff   CLINICAL INFECTIOUS DISEASES

Innate immune function of the neisserial porins and the relationship to vaccine adjuvant activity

(2010) Lee M Wetzler   Future Microbiology

Evolution of Outer Membrane β-Barrels from an Ancestral ββ Hairpin

(2010) M. Remmert et al.   MOLECULAR BIOLOGY AND EVOLUTION

OMPdb: a database of  -barrel outer membrane proteins from Gram-negative bacteria

(2010) K. D. Tsirigos et al.   NUCLEIC ACIDS RESEARCH

Physical and genetic characterization of an outer-membrane protein (OmpM1) containing an N-terminal S-layer-like homology domain from the phylogenetically Gram-positive gut anaerobe Mitsuokella multacida

(2009) M.L. Kalmokoff et al.   ANAEROBE

The evolution of protein domain families

(2009) Marija Buljan et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Reconstitution Experiments and Gene Deletions Reveal the Existence of Two-Component Major Cell Wall Channels in the Genus Corynebacterium

(2009) E. Barth et al.   JOURNAL OF BACTERIOLOGY

Membrane Porters of ATP-Binding Cassette Transport Systems Are Polyphyletic

(2009) Bin Wang et al.   JOURNAL OF MEMBRANE BIOLOGY

NanC Crystal Structure, a Model for Outer-Membrane Channels of the Acidic Sugar-Specific KdgM Porin Family

(2009) Christophe Wirth et al.   JOURNAL OF MOLECULAR BIOLOGY

Bioinformatic Analyses of Transmembrane Transport: Novel Software for Deducing Protein Phylogeny, Topology, and Evolution

(2009) Ming Ren Yen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

HHomp—prediction and classification of outer membrane proteins

(2009) Michael Remmert et al.   NUCLEIC ACIDS RESEARCH

Signals in bacterial β-barrel proteins are functional in eukaryotic cells for targeting to and assembly in mitochondria

(2009) Dirk M. Walther et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into pilus assembly and secretion from the structure and functional characterization of usher PapC

(2009) Y. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

(2008) Håkan Viklund et al.   BIOINFORMATICS

De novo identification of highly diverged protein repeats by probabilistic consistency

(2008) A. Biegert et al.   BIOINFORMATICS

Fiber Formation across the Bacterial Outer Membrane by the Chaperone/Usher Pathway

(2008) Han Remaut et al.   CELL

Presence inLegionella pneumophilaof a mammalian-like mitochondrial permeability transition pore?

(2008) Arbia Khemiri et al.   FEMS MICROBIOLOGY LETTERS

Roles of pgaABCD Genes in Synthesis, Modification, and Export of the Escherichia coli Biofilm Adhesin Poly- -1,6-N-Acetyl-D-Glucosamine

(2008) Y. Itoh et al.   JOURNAL OF BACTERIOLOGY

A Putative α-Helical Porin from Corynebacterium glutamicum

(2008) Karin Ziegler et al.   JOURNAL OF MOLECULAR BIOLOGY

Nutrient acquisition by mycobacteria

(2008) M. Niederweis   MICROBIOLOGY-SGM

PSI-BLAST pseudocounts and the minimum description length principle

(2008) Stephen F. Altschul et al.   NUCLEIC ACIDS RESEARCH

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH