Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

A review of wheat diseases-a field perspective

(2017) Melania Figueroa et al.   MOLECULAR PLANT PATHOLOGY

Variation in theAvrSr35gene determinesSr35resistance against wheat stem rust race Ug99

(2017) Andres Salcedo et al.   SCIENCE

Loss ofAvrSr50by somatic exchange in stem rust leads to virulence forSr50resistance in wheat

(2017) Jiapeng Chen et al.   SCIENCE

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

(2017) Jana Sperschneider et al.   Scientific Reports

Integrated decoys and effector traps: how to catch a plant pathogen

(2016) Jeffrey G. Ellis   BMC BIOLOGY

Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses

(2016) Daniel Penselin et al.   BMC GENOMICS

Different waves of effector genes with contrasted genomic location are expressed by Leptosphaeria maculans during cotyledon and stem colonization of oilseed rape

(2016) Julie Gervais et al.   MOLECULAR PLANT PATHOLOGY

Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana

(2016) Graeme J. Kettles et al.   NEW PHYTOLOGIST

PHI-base: a new interface and further additions for the multi-species pathogen–host interactions database

(2016) Martin Urban et al.   NUCLEIC ACIDS RESEARCH

The WOPR Protein Ros1 Is a Master Regulator of Sporogenesis and Late Effector Gene Expression in the Maize Pathogen Ustilago maydis

(2016) Marie Tollot et al.   PLoS Pathogens

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

Persistence of the Host-Selective Toxin Ptr ToxB in the Apoplast

(2015) Melania Figueroa et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Candidate Effector Proteins of the Rust Pathogen Melampsora larici-populina Target Diverse Plant Cell Compartments

(2015) Benjamin Petre et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

Effector P: predicting fungal effector proteins from secretomes using machine learning

(2015) Jana Sperschneider et al.   NEW PHYTOLOGIST

Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi

(2015) Jana Sperschneider et al.   PLoS Pathogens

Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi

(2015) Karine de Guillen et al.   PLoS Pathogens

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes

(2015) Narayana M. Upadhyaya et al.   Frontiers in Plant Science

Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors

(2015) Jana Sperschneider et al.   Frontiers in Plant Science

Plant Cell Wall–Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi

(2014) Christian P. Kubicek et al.   Annual Review of Phytopathology

Filamentous pathogen effector functions: of pathogens, hosts and microbiomes

(2014) Hanna Rovenich et al.   CURRENT OPINION IN PLANT BIOLOGY

Genomics of wood-degrading fungi

(2014) Robin A. Ohm et al.   FUNGAL GENETICS AND BIOLOGY

Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi

(2014) Jaqueline Hess et al.   Genome Biology and Evolution

Microbial Peptidyl-Prolyl cis/trans Isomerases (PPIases): Virulence Factors and Potential Alternative Drug Targets

(2014) C. M. Unal et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens

(2014) Vivianne G. A. A. Vleeshouwers et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

(2014) Guilhem Janbon et al.   PLoS Genetics

The Ins and Outs of Rust Haustoria

(2014) Diana P. Garnica et al.   PLoS Pathogens

Effector proteins of rust fungi

(2014) Benjamin Petre et al.   Frontiers in Plant Science

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

(2014) Adnane Nemri et al.   Frontiers in Plant Science

The wheat powdery mildew genome shows the unique evolution of an obligate biotroph

(2013) Thomas Wicker et al.   NATURE GENETICS

A Fusarium graminearum xylanase expressed during wheat infection is a necrotizing factor but is not essential for virulence

(2013) Luca Sella et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis , Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence

(2013) Viola A. Manning et al.   G3-Genes Genomes Genetics

Structure and evolution of barley powdery mildew effector candidates

(2012) Carsten Pedersen et al.   BMC GENOMICS

Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses

(2012) Richard J O'Connell et al.   NATURE GENETICS

Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements

(2012) J. D. Laurie et al.   PLANT CELL

Endogenous silencing ofPuccinia triticinapathogenicity genes throughin planta-expressed sequences leads to the suppression of rust diseases on wheat

(2012) Vinay Panwar et al.   PLANT JOURNAL

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

(2012) E. Morin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides

(2012) Zhiwei Zhu et al.   Nature Communications

The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry

(2012) Pierre J. G. M. de Wit et al.   PLoS Genetics

Sequential Delivery of Host-Induced Virulence Effectors by Appressoria and Intracellular Hyphae of the Phytopathogen Colletotrichum higginsianum

(2012) Jochen Kleemann et al.   PLoS Pathogens

Plant pathogens as a source of diverse enzymes for lignocellulose digestion

(2011) Donna M Gibson et al.   CURRENT OPINION IN MICROBIOLOGY

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

(2011) Dario Cantu et al.   PLoS One

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

(2011) Thierry Rouxel et al.   Nature Communications

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea

(2011) Joelle Amselem et al.   PLoS Genetics

Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis

(2011) Christopher A. Desjardins et al.   PLoS Genetics

Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

(2011) Qiang Gao et al.   PLoS Genetics

Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens

(2011) Steven J. Klosterman et al.   PLoS Pathogens

Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine

(2011) Peng Zheng et al.   GENOME BIOLOGY

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

(2010) J. E. Stajich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism

(2010) P. D. Spanu et al.   SCIENCE

A molecular perspective: biology of the emerging pathogen Batrachochytrium dendrobatidis

(2009) EB Rosenblum et al.   DISEASES OF AQUATIC ORGANISMS

Interaction Transcriptome Analysis Identifies Magnaporthe oryzae BAS1-4 as Biotrophy-Associated Secreted Proteins in Rice Blast Disease

(2009) G. Mosquera et al.   PLANT CELL

Genomic Survey of the Non-Cultivatable Opportunistic Human Pathogen, Enterocytozoon bieneusi

(2009) Donna E. Akiyoshi et al.   PLoS Pathogens

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH