Recurrent microbial community types driven by nearshore and seasonal processes in coastal Southern California

Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms

(2020) Burak Avcı et al.   ISME Journal

Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy

(2020) Frank Xavier Ferrer-González et al.   ISME Journal

Using empirical dynamic modeling to assess relationships between atmospheric trace gases and eukaryotic phytoplankton populations in coastal Southern California

(2020) Jesse M. Wilson et al.   MARINE CHEMISTRY

Temporal dynamics of eukaryotic microbial diversity at a coastal Pacific site

(2018) Maitreyi Nagarkar et al.   ISME Journal

Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling

(2018) David M. Needham et al.   ISME Journal

The Ocean Gene Atlas: exploring the biogeography of plankton genes online

(2018) Emilie Villar et al.   NUCLEIC ACIDS RESEARCH

Microbial community networks associated with variations in community respiration rates during upwelling in nearshore Monterey Bay, California

(2018) Jesse M. Wilson et al.   Environmental Microbiology Reports

Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations

(2018) Stefan Lambert et al.   ISME Journal

EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences

(2018) Pierre Barbera et al.   SYSTEMATIC BIOLOGY

Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom

(2017) Marine Landa et al.   ISME Journal

Bacterial community segmentation facilitates the prediction of ecosystem function along the coast of the western Antarctic Peninsula

(2017) Jeff S Bowman et al.   ISME Journal

Environmental drivers of a microbial genomic transition zone in the ocean’s interior

(2017) Daniel R. Mende et al.   Nature Microbiology

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

(2015) Markus V. Lindh et al.   ENVIRONMENTAL MICROBIOLOGY

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula

(2015) Jeff S. Bowman et al.   PLoS One

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial diversity and the lability of dissolved organic carbon

(2014) C. E. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Beta diversity of marine bacteria depends on temporal scale

(2013) Stephen M. Hatosy et al.   ECOLOGY

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Structuring of bacterioplankton communities by specific dissolved organic carbon compounds

(2012) Laura Gómez-Consarnau et al.   ENVIRONMENTAL MICROBIOLOGY

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean

(2011) Paola R. Gómez-Pereira et al.   ENVIRONMENTAL MICROBIOLOGY

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Temporal and spatial distributions of marine Synechococcus in the Southern California Bight assessed by hybridization to bead-arrays

(2011) V Tai et al.   MARINE ECOLOGY PROGRESS SERIES

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Identification of Carbohydrate Metabolism Genes in the Metagenome of a Marine Biofilm Community Shown to Be Dominated by Gammaproteobacteria and Bacteroidetes

(2010) Jennifer L. Edwards et al.   Genes

Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site

(2009) Vera Tai et al.   ISME Journal

Coastal phytoplankton blooms in the Southern California Bight

(2009) Hey-Jin Kim et al.   PROGRESS IN OCEANOGRAPHY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Bacterial carbon processing by generalist species in the coastal ocean

(2008) Xiaozhen Mou et al.   NATURE