Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy

Polysaccharide niche partitioning of distinct Polaribacter clades during North Sea spring algal blooms

(2020) Burak Avcı et al.   ISME Journal

Ecological drivers of bacterial community assembly in synthetic phycospheres

(2020) He Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Laminarin is a major molecule in the marine carbon cycle

(2020) Stefan Becker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modular Assembly of Polysaccharide-Degrading Marine Microbial Communities

(2019) Tim N. Enke et al.   CURRENT BIOLOGY

Sulfur metabolites that facilitate oceanic phytoplankton–bacteria carbon flux

(2019) Marine Landa et al.   ISME Journal

NMR characterization and evaluation of antibacterial and antiobiofilm activity of organic extracts from stationary phase batch cultures of five marine microalgae (Dunaliella sp., D. salina, Chaetoceros calcitrans, C. gracilis and Tisochrysis lutea)

(2019) Ma José Iglesias et al.   PHYTOCHEMISTRY

Application of nuclear magnetic resonance for analyzing metabolic characteristics of winter diatom blooms

(2019) Kwang-Seuk Jeong et al.   JOURNAL OF PLANKTON RESEARCH

Phytoplankton-derived polysaccharides in the marine environment and their interactions with heterotrophic bacteria

(2018) Marco Mühlenbruch et al.   ENVIRONMENTAL MICROBIOLOGY

Metabolite Profiling of the Microalgal Diatom Chaetoceros Calcitrans and Correlation with Antioxidant and Nitric Oxide Inhibitory Activities via 1H NMR-Based Metabolomics

(2018) Awanis Azizan et al.   Marine Drugs

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

(2018) Han Zhang et al.   NUCLEIC ACIDS RESEARCH

Ancient acquisition of “alginate utilization loci” by human gut microbiota

(2018) Sophie Mathieu et al.   Scientific Reports

Bacterial Communities of Diatoms Display Strong Conservation Across Strains and Time

(2018) Gregory Behringer et al.   Frontiers in Microbiology

Adaptive mechanisms that provide competitive advantages to marine bacteroidetes during microalgal blooms

(2018) Frank Unfried et al.   ISME Journal

Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides

(2018) Hanna Koch et al.   ISME Journal

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

Recognition cascade and metabolite transfer in a marine bacteria-phytoplankton model system

(2017) Bryndan P. Durham et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial transcriptome remodeling during sequential co-culture with a marine dinoflagellate and diatom

(2017) Marine Landa et al.   ISME Journal

Polysaccharide Utilization Loci: Fueling Microbial Communities

(2017) Julie M. Grondin et al.   JOURNAL OF BACTERIOLOGY

The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics

(2017) Lindsay K. Pino et al.   MASS SPECTROMETRY REVIEWS

A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin

(2016) Johan Larsbrink et al.   Biotechnology for Biofuels

Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT

(2016) Tristan Barbeyron et al.   ENVIRONMENTAL MICROBIOLOGY

Benzoyl chloride derivatization with liquid chromatography–mass spectrometry for targeted metabolomics of neurochemicals in biological samples

(2016) Jenny-Marie T Wong et al.   JOURNAL OF CHROMATOGRAPHY A

Deciphering ocean carbon in a changing world

(2016) Mary Ann Moran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial interactions lead to rapid micro-scale successions on model marine particles

(2016) Manoshi S. Datta et al.   Nature Communications

The Molecular Ecophysiology of Programmed Cell Death in Marine Phytoplankton

(2015) Kay D. Bidle   Annual Review of Marine Science

Environmental metabolomics: Analytical strategies

(2015) Melissa C. Kido Soule et al.   MARINE CHEMISTRY

Diatom-Specific Oligosaccharide and Polysaccharide Structures Help to Unravel Biosynthetic Capabilities in Diatoms

(2015) Bruno Gügi et al.   Marine Drugs

Overflow metabolism in Escherichia coli results from efficient proteome allocation

(2015) Markus Basan et al.   NATURE

Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria

(2015) S. A. Amin et al.   NATURE

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dissolved organic matter (DOM) release by phytoplankton in the contemporary and future ocean

(2014) Daniel C.O. Thornton   EUROPEAN JOURNAL OF PHYCOLOGY

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

Master recyclers: features and functions of bacteria associated with phytoplankton blooms

(2014) Alison Buchan et al.   NATURE REVIEWS MICROBIOLOGY

Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean

(2014) B. E. Pedler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cryptic carbon and sulfur cycling between surface ocean plankton

(2014) Bryndan P. Durham et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901TReveals a Broad Potential for Degradation of Algal Polysaccharides

(2013) Alexander J. Mann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sympatric inhibition and niche differentiation suggest alternative coevolutionary trajectories among Streptomycetes

(2013) Linda L Kinkel et al.   ISME Journal

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Identification of isethionic acid and other small molecule metabolites of Fragilariopsis cylindrus with nuclear magnetic resonance

(2012) Arezue F. B. Boroujerdi et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Compatible solutes in three marine intertidal microphytobenthic Wadden Sea diatoms exposed to different salinities

(2012) Bettina Scholz et al.   EUROPEAN JOURNAL OF PHYCOLOGY

N-Acetylgalactosamine Utilization Pathway and Regulon in Proteobacteria

(2012) Semen A. Leyn et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The effects of changing climate on microzooplankton grazing and community structure: drivers, predictions and knowledge gaps

(2012) David A. Caron et al.   JOURNAL OF PLANKTON RESEARCH

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Ruegeria pomeroyi acuI Gene Has a Role in DMSP Catabolism and Resembles yhdH of E. coli and Other Bacteria in Conferring Resistance to Acrylate

(2012) Jonathan D. Todd et al.   PLoS One

Distribution and Functions of TonB-Dependent Transporters in Marine Bacteria and Environments: Implications for Dissolved Organic Matter Utilization

(2012) Kai Tang et al.   PLoS One

Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom

(2012) H. Teeling et al.   SCIENCE

Recalcitrant Dissolved Organic Carbon Fractions

(2011) Dennis A. Hansell   Annual Review of Marine Science

Molecular genetics and biochemistry of N-acetyltaurine degradation by Cupriavidus necator H16

(2011) K. Denger et al.   MICROBIOLOGY-SGM

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts

(2011) Eric C. Martens et al.   PLOS BIOLOGY

The Impact of Microbial Metabolism on Marine Dissolved Organic Matter

(2010) Elizabeth B. Kujawinski   Annual Review of Marine Science

Genomic encyclopedia of sugar utilization pathways in the Shewanella genus

(2010) Dmitry A Rodionov et al.   BMC GENOMICS

Genome characteristics of a generalist marine bacterial lineage

(2010) Ryan J Newton et al.   ISME Journal

Identification and Regulation of the N-Acetylglucosamine Utilization Pathway of the Plant Pathogenic Bacterium Xanthomonas campestris pv. campestris

(2010) A. Boulanger et al.   JOURNAL OF BACTERIOLOGY

2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134: purification of dihydroxypropanesulfonate 3-dehydrogenase

(2010) J. Mayer et al.   MICROBIOLOGY-SGM

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

(2010) J. McCarren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chemoattraction to Dimethylsulfoniopropionate Throughout the Marine Microbial Food Web

(2010) J. R. Seymour et al.   SCIENCE

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

(2009) Rachel S. Poretsky et al.   ENVIRONMENTAL MICROBIOLOGY

NagA-Dependent Uptake of N-Acetyl-Glucosamine and N-Acetyl-Chitin Oligosaccharides across the Outer Membrane of Caulobacter crescentus

(2008) S. Eisenbeis et al.   JOURNAL OF BACTERIOLOGY

MODELING THE RELEASE OF DISSOLVED ORGANIC MATTER BY PHYTOPLANKTON1

(2008) Kevin J. Flynn et al.   JOURNAL OF PHYCOLOGY