Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

(2013) David M Needham et al.   ISME Journal

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data

(2012) Li C. Xia et al.   BIOINFORMATICS

Seasonality and monthly dynamics of marine myovirus communities

(2012) Cheryl-Emiliane T. Chow et al.   ENVIRONMENTAL MICROBIOLOGY

Basin-scale patterns in the abundance of SAR11 subclades, marine Actinobacteria (OM1), members of the Roseobacter clade and OCS116 in the South Atlantic

(2012) Robert M. Morris et al.   ENVIRONMENTAL MICROBIOLOGY

Ecological structuring of bacterial and archaeal taxa in surface ocean waters

(2012) Pelin Yilmaz et al.   FEMS MICROBIOLOGY ECOLOGY

Global biogeography of SAR11 marine bacteria

(2012) Mark V Brown et al.   Molecular Systems Biology

Seasonality in Ocean Microbial Communities

(2012) S. J. Giovannoni et al.   SCIENCE

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

(2011) Li C Xia et al.   BMC Systems Biology

Particle fluxes in San Pedro Basin, California: A four-year record of sedimentation and physical forcing

(2011) Lisa E. Collins et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR

(2011) Ryan W. Paerl et al.   ENVIRONMENTAL MICROBIOLOGY

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California

(2011) J Michael Beman et al.   ISME Journal

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation

(2011) Julie C Robidart et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea

(2011) Rachel J Parsons et al.   ISME Journal

Response of Prochlorococcus ecotypes to co-culture with diverse marine bacteria

(2011) Daniel Sher et al.   ISME Journal

Coherent dynamics and association networks among lake bacterioplankton taxa

(2011) Alexander Eiler et al.   ISME Journal

Synechococcus growth in the ocean may depend on the lysis of heterotrophic bacteria

(2011) M. G. Weinbauer et al.   JOURNAL OF PLANKTON RESEARCH

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Activity of abundant and rare bacteria in a coastal ocean

(2011) B. J. Campbell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Non-Random Assembly of Bacterioplankton Communities in the Subtropical North Pacific Ocean

(2011) Alexander Eiler et al.   Frontiers in Microbiology

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight

(2010) J. Michael Beman et al.   ENVIRONMENTAL MICROBIOLOGY

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

(2010) Rex R Malmstrom et al.   ISME Journal

Seasonal analysis of protistan community structure and diversity at the USC Microbial Observatory (San Pedro Channel, North Pacific Ocean)

(2010) Peter D. Countway et al.   LIMNOLOGY AND OCEANOGRAPHY

Dynamics of the SAR11 bacterioplankton lineage in relation to environmental conditions in the oligotrophic North Pacific subtropical gyre

(2009) Alexander Eiler et al.   ENVIRONMENTAL MICROBIOLOGY

The seasonal structure of microbial communities in the Western English Channel

(2009) Jack A. Gilbert et al.   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities

(2009) Anders F Andersson et al.   ISME Journal

Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site

(2009) Vera Tai et al.   ISME Journal

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Megx.net: integrated database resource for marine ecological genomics

(2009) R. Kottmann et al.   NUCLEIC ACIDS RESEARCH

Contributions of Long-Term Research and Time-Series Observations to Marine Ecology and Biogeochemistry

(2008) Hugh W. Ducklow et al.   Annual Review of Marine Science

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea

(2008) Craig A Carlson et al.   ISME Journal

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

A latitudinal diversity gradient in planktonic marine bacteria

(2008) J. A. Fuhrman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA