Morphological stasis masks ecologically divergent coral species on tropical reefs
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Title
Morphological stasis masks ecologically divergent coral species on tropical reefs
Authors
Keywords
coral reefs, Scleractinia, cryptic diversity, mesophotic, Pachyseris, nuclear genome
Journal
CURRENT BIOLOGY
Volume -, Issue -, Pages -
Publisher
Elsevier BV
Online
2021-04-02
DOI
10.1016/j.cub.2021.03.028
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Note: Only part of the references are listed.- Transcriptome‐based target‐enrichment baits for stony corals (Cnidaria: Anthozoa: Scleractinia)
- (2020) Randolph Z.B. Quek et al. Molecular Ecology Resources
- Intergenerational epigenetic inheritance in reef-building corals
- (2020) Yi Jin Liew et al. Nature Climate Change
- Towards a rigorous species delimitation framework for scleractinian corals based on RAD sequencing: the case study of Leptastrea from the Indo-Pacific
- (2020) Roberto Arrigoni et al. CORAL REEFS
- Performing highly efficient genome scans for local adaptation with R package pcadapt version 4
- (2020) Florian Privé et al. MOLECULAR BIOLOGY AND EVOLUTION
- Upwelling as the major source of nitrogen for shallow and deep reef‐building corals across an oceanic atoll system
- (2019) Veronica Z. Radice et al. FUNCTIONAL ECOLOGY
- ipyrad: Interactive assembly and analysis of RADseq datasets
- (2019) Deren A R Eaton et al. BIOINFORMATICS
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Molecular characterization of larval development from fertilization to metamorphosis in a reef-building coral
- (2018) Marie E. Strader et al. BMC GENOMICS
- Uncovering hidden coral diversity: a new cryptic lobophylliid scleractinian from the Indian Ocean
- (2018) Roberto Arrigoni et al. CLADISTICS
- Accurate population genetic measurements require cryptic species identification in corals
- (2018) Elizabeth A. Sheets et al. CORAL REEFS
- Adaptation to reef habitats through selection on the coral animal and its associated microbiome
- (2018) Madeleine J. H. van Oppen et al. MOLECULAR ECOLOGY
- The proteomic response of the reef coral Pocillopora acuta to experimentally elevated temperatures
- (2018) Anderson B. Mayfield et al. PLoS One
- CRISPR/Cas9-mediated genome editing in a reef-building coral
- (2018) Phillip A. Cleves et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A fast likelihood solution to the genetic clustering problem
- (2018) Marie-Pauline Beugin et al. Methods in Ecology and Evolution
- Deep reefs of the Great Barrier Reef offer limited thermal refuge during mass coral bleaching
- (2018) Pedro R. Frade et al. Nature Communications
- The Roles of Introgression and Climate Change in the Rise to Dominance of Acropora Corals
- (2018) Yafei Mao et al. CURRENT BIOLOGY
- Polygenic evolution drives species divergence and climate adaptation in corals
- (2017) Noah H. Rose et al. EVOLUTION
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
- (2017) Robert M Waterhouse et al. MOLECULAR BIOLOGY AND EVOLUTION
- Canonical and cellular pathways timing gamete release in Acropora digitifera, Okinawa, Japan
- (2017) Y. Rosenberg et al. MOLECULAR ECOLOGY
- Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems
- (2017) Andrea M. Quattrini et al. Molecular Ecology Resources
- Coral hybridization or phenotypic variation? Genomic data reveal gene flow between Porites lobata and P. Compressa
- (2017) Z.H. Forsman et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- From population connectivity to the art of striping Russian dolls: the lessons from Pocillopora corals
- (2017) Pauline Gélin et al. Ecology and Evolution
- Deep reefs are not universal refuges: Reseeding potential varies among coral species
- (2017) Pim Bongaerts et al. Science Advances
- Cryptic genetic divergence within threatened species of Acropora coral from the Indian and Pacific Oceans
- (2016) Zoe T. Richards et al. CONSERVATION GENETICS
- Empty Niches after Extinctions Increase Population Sizes of Modern Corals
- (2016) Carlos Prada et al. CURRENT BIOLOGY
- Developmental Progression in the CoralAcropora digitiferaIs Controlled by Differential Expression of Distinct Regulatory Gene Networks
- (2016) Alejandro Reyes-Bermudez et al. Genome Biology and Evolution
- Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef
- (2016) Vimoksalehi Lukoschek et al. MOLECULAR ECOLOGY
- Phased diploid genome assembly with single-molecule real-time sequencing
- (2016) Chen-Shan Chin et al. NATURE METHODS
- Biannual Spawning and Temporal Reproductive Isolation in Acropora Corals
- (2016) James P. Gilmour et al. PLoS One
- The Microbial Signature Provides Insight into the Mechanistic Basis of Coral Success across Reef Habitats
- (2016) Alejandra Hernandez-Agreda et al. mBio
- The Coral Trait Database, a curated database of trait information for coral species from the global oceans
- (2016) Joshua S. Madin et al. Scientific Data
- Species Richness on Coral Reefs and the Pursuit of Convergent Global Estimates
- (2015) Rebecca Fisher et al. CURRENT BIOLOGY
- Unexpected cryptic species diversity in the widespread coralSeriatopora hystrixmasks spatial-genetic patterns of connectivity
- (2015) Patricia A. Warner et al. MOLECULAR ECOLOGY
- Asynchronous spawning in sympatric populations of a hard coral reveals cryptic species and ancient genetic lineages
- (2015) Natalie L. Rosser MOLECULAR ECOLOGY
- popart: full-feature software for haplotype network construction
- (2015) Jessica W. Leigh et al. Methods in Ecology and Evolution
- Signaling cascades and the importance of moonlight in coral broadcast mass spawning
- (2015) Paulina Kaniewska et al. eLife
- Repbase Update, a database of repetitive elements in eukaryotic genomes
- (2015) Weidong Bao et al. Mobile DNA
- Quartet Inference from SNP Data Under the Coalescent Model
- (2014) Julia Chifman et al. BIOINFORMATICS
- PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
- (2014) Deren A. R. Eaton BIOINFORMATICS
- Exploring genome characteristics and sequence quality without a reference
- (2014) Jared T. Simpson BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- ANGSD: Analysis of Next Generation Sequencing Data
- (2014) Thorfinn Sand Korneliussen et al. BMC BIOINFORMATICS
- Inferring human population size and separation history from multiple genome sequences
- (2014) Stephan Schiffels et al. NATURE GENETICS
- Pachyseris inattesa sp. n. (Cnidaria, Anthozoa, Scleractinia): a new reef coral species from the Red Sea and its phylogenetic relationships
- (2014) Tullia Isotta Terraneo et al. ZooKeys
- With eyes wide open: a revision of species within and closely related to thePocillopora damicornisspecies complex (Scleractinia; Pocilloporidae) using morphology and genetics
- (2014) Sebastian Schmidt-Roach et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- A coral reef refuge in the Red Sea
- (2013) Maoz Fine et al. GLOBAL CHANGE BIOLOGY
- The Skeletal Proteome of the Coral Acropora millepora: The Evolution of Calcification by Co-Option and Domain Shuffling
- (2013) Paula Ramos-Silva et al. MOLECULAR BIOLOGY AND EVOLUTION
- Revisiting the connectivity puzzle of the common coralPocillopora damicornis
- (2013) G. Torda et al. MOLECULAR ECOLOGY
- Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
- (2013) Christoph Hahn et al. NUCLEIC ACIDS RESEARCH
- Long prereproductive selection and divergence by depth in a Caribbean candelabrum coral
- (2013) C. Prada et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Dlx genes as clues to vertebrate genomics and craniofacial evolution
- (2013) Masaki Takechi et al. SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- Overview of the taxonomy of zooxanthellate Scleractinia
- (2013) John Veron ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies
- (2012) R. Kofler et al. BIOINFORMATICS
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython
- (2012) Eric Talevich et al. BMC BIOINFORMATICS
- A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
- (2012) Pablo Cingolani et al. FLY
- Extensive sympatry, cryptic diversity and introgression throughout the geographic distribution of two coral species complexes
- (2012) JASON T. LADNER et al. MOLECULAR ECOLOGY
- MITOS: Improved de novo metazoan mitochondrial genome annotation
- (2012) Matthias Bernt et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Primer3—new capabilities and interfaces
- (2012) Andreas Untergasser et al. NUCLEIC ACIDS RESEARCH
- A Lipidomic Approach to Understanding Free Fatty Acid Lipogenesis Derived from Dissolved Inorganic Carbon within Cnidarian-Dinoflagellate Symbiosis
- (2012) Simon R. Dunn et al. PLoS One
- Overcoming Deep Roots, Fast Rates, and Short Internodes to Resolve the Ancient Rapid Radiation of Eupolypod II Ferns
- (2012) Carl J. Rothfels et al. SYSTEMATIC BIOLOGY
- Taxonomic classification of the reef coral family Mussidae (Cnidaria: Anthozoa: Scleractinia)
- (2012) ANN F. BUDD et al. ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY
- The variant call format and VCFtools
- (2011) P. Danecek et al. BIOINFORMATICS
- adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
- (2011) Thibaut Jombart et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Adaptive divergence in a scleractinian coral: physiological adaptation of Seriatopora hystrix to shallow and deep reef habitats
- (2011) Pim Bongaerts et al. BMC EVOLUTIONARY BIOLOGY
- Cleaning up the 'Bigmessidae': Molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae
- (2011) Danwei Huang et al. BMC EVOLUTIONARY BIOLOGY
- Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia)
- (2011) Fabrizio Stefani et al. CORAL REEFS
- GENETIC, SPATIAL, AND TEMPORAL COMPONENTS OF PRECISE SPAWNING SYNCHRONY IN REEF BUILDING CORALS OF THE MONTASTRAEA ANNULARIS SPECIES COMPLEX
- (2011) Don R. Levitan et al. EVOLUTION
- Symbiodinium diversity in mesophotic coral communities on the Great Barrier Reef: a first assessment
- (2011) P Bongaerts et al. MARINE ECOLOGY PROGRESS SERIES
- Historical and contemporary factors shape the population genetic structure of the broadcast spawning coral, Acropora millepora, on the Great Barrier Reef
- (2011) MADELEINE J. H. Van OPPEN et al. MOLECULAR ECOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence, morphological stasis or interspecific hybridization?
- (2011) Jean-François Flot et al. BMC ECOLOGY
- Discriminant analysis of principal components: a new method for the analysis of genetically structured populations
- (2010) Thibaut Jombart et al. BMC GENETICS
- Semi-permeable species boundaries in the coral genus Madracis: Introgression in a brooding coral system
- (2010) P.R. Frade et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Threatened Corals Provide Underexplored Microbial Habitats
- (2010) Shinichi Sunagawa et al. PLoS One
- Genetic Divergence across Habitats in the Widespread Coral Seriatopora hystrix and Its Associated Symbiodinium
- (2010) Pim Bongaerts et al. PLoS One
- Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals
- (2009) Andrew H. Baird et al. Annual Review of Ecology Evolution and Systematics
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Shape-shifting corals: Molecular markers show morphology is evolutionarily plastic in Porites
- (2009) Zac H Forsman et al. BMC EVOLUTIONARY BIOLOGY
- Effects of temperature on gene expression in embryos of the coral Montastraea faveolata
- (2009) Christian R Voolstra et al. BMC GENOMICS
- Morphological plasticity in scleractinian corals
- (2008) Peter A. Todd BIOLOGICAL REVIEWS
- FGF signalling controls formation of the apical sensory organ in the cnidarian Nematostella vectensis
- (2008) F. Rentzsch et al. DEVELOPMENT
- Host pigments: potential facilitators of photosynthesis in coral symbioses
- (2008) SOPHIE G. DOVE et al. PLANT CELL AND ENVIRONMENT
- Genetic Traces of Recent Long-Distance Dispersal in a Predominantly Self-Recruiting Coral
- (2008) Madeleine J. H. van Oppen et al. PLoS One
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