Overcoming Deep Roots, Fast Rates, and Short Internodes to Resolve the Ancient Rapid Radiation of Eupolypod II Ferns

First insights into fern matK phylogeny

(2011) Li-Yaung Kuo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DendroPy: a Python library for phylogenetic computing

(2010) J. Sukumaran et al.   BIOINFORMATICS

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

(2010) Laura Wegener Parfrey et al.   SYSTEMATIC BIOLOGY

Inferring phylogenies with incomplete data sets: a 5-gene, 567-taxon analysis of angiosperms

(2009) J Gordon Burleigh et al.   BMC EVOLUTIONARY BIOLOGY

Conservation of selection on matK following an ancient loss of its flanking intron

(2009) Aaron M. Duffy et al.   GENE

Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy

(2009) E. Schuettpelz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

When Trees Grow Too Long: Investigating the Causes of Highly Inaccurate Bayesian Branch-Length Estimates

(2009) Jeremy M. Brown et al.   SYSTEMATIC BIOLOGY

Networks, Trees, and Treeshrews: Assessing Support and Identifying Conflict with Multiple Loci and a Problematic Root

(2009) Trina E. Roberts et al.   SYSTEMATIC BIOLOGY

Relaxed Molecular Clocks, the Bias–Variance Trade-off, and the Quality of Phylogenetic Inference

(2009) Joel O. Wertheim et al.   SYSTEMATIC BIOLOGY

Cryptic Failure of Partitioned Bayesian Phylogenetic Analyses: Lost in the Land of Long Trees

(2009) David C. Marshall   SYSTEMATIC BIOLOGY

Different gymnosperm outgroups have (mostly) congruent signal regarding the root of flowering plant phylogeny

(2008) Sean W. Graham et al.   AMERICAN JOURNAL OF BOTANY

Phylogenetic Inference Using Whole Genomes

(2008) Bruce Rannala et al.   Annual Review of Genomics and Human Genetics

Empirical evaluation of a prior for Bayesian phylogenetic inference

(2008) Z. Yang   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree

(2008) Edward Susko   SYSTEMATIC BIOLOGY

Resolving an Ancient, Rapid Radiation in Saxifragales

(2008) Shuguang Jian et al.   SYSTEMATIC BIOLOGY