- Home
- Publications
- Publication Search
- Publication Details
Title
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
Authors
Keywords
-
Journal
BIOINFORMATICS
Volume 30, Issue 13, Pages 1844-1849
Publisher
Oxford University Press (OUP)
Online
2014-03-07
DOI
10.1093/bioinformatics/btu121
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A New Method for Genome-wide Marker Development and Genotyping Holds Great Promise for Molecular Primatology
- (2013) Christina M. Bergey et al. INTERNATIONAL JOURNAL OF PRIMATOLOGY
- ‘Next generation’ biogeography: towards understanding the drivers of species diversification and persistence
- (2013) Christian Lexer et al. JOURNAL OF BIOGEOGRAPHY
- The evolutionary history ofXiphophorusfish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing
- (2013) Julia C. Jones et al. MOLECULAR ECOLOGY
- Genotyping-by-sequencing in ecological and conservation genomics
- (2013) Shawn R. Narum et al. MOLECULAR ECOLOGY
- Stacks: an analysis tool set for population genomics
- (2013) Julian Catchen et al. MOLECULAR ECOLOGY
- Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing
- (2013) X. Q. Wang et al. Molecular Ecology Resources
- Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
- (2013) Deren A. R. Eaton et al. SYSTEMATIC BIOLOGY
- Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization
- (2013) Marie Cariou et al. Ecology and Evolution
- Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
- (2012) Z. Chong et al. BIOINFORMATICS
- EggLib: processing, analysis and simulation tools for population genetics and genomics
- (2012) Stéphane De Mita et al. BMC GENETICS
- Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes
- (2012) I. Keller et al. MOLECULAR ECOLOGY
- Genome-wide patterns of divergence and gene flow across a butterfly radiation
- (2012) Nicola J. Nadeau et al. MOLECULAR ECOLOGY
- Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species
- (2012) Kai N. Stölting et al. MOLECULAR ECOLOGY
- Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation
- (2012) Catherine E. Wagner et al. MOLECULAR ECOLOGY
- Inferring Phylogenies from RAD Sequence Data
- (2012) Benjamin E. R. Rubin et al. PLoS One
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- Testing for Ancient Admixture between Closely Related Populations
- (2011) Eric Y. Durand et al. MOLECULAR BIOLOGY AND EVOLUTION
- Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads
- (2011) Paul D. Etter et al. PLoS One
- Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences
- (2011) Julian M. Catchen et al. G3-Genes Genomes Genetics
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Small insertions and deletions (INDELs) in human genomes
- (2010) J. M. Mullaney et al. HUMAN MOLECULAR GENETICS
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- Estimation of Nucleotide Diversity, Disequilibrium Coefficients, and Mutation Rates from High-Coverage Genome-Sequencing Projects
- (2008) M. Lynch MOLECULAR BIOLOGY AND EVOLUTION
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started