Succession of the fungal endophytic microbiome of wheat is dependent on tissue-specific interactions between host genotype and environment

Wheat dwarfing influences selection of the rhizosphere microbiome

(2020) Vanessa N. Kavamura et al.   Scientific Reports

Selection of fungal endophytes with biocontrol potential against Fusarium head blight in wheat

(2020) Edward C. Rojas et al.   BIOLOGICAL CONTROL

Influence of plant genotype and soil on the wheat rhizosphere microbiome: evidences for a core microbiome across eight African and European soils

(2020) Marie Simonin et al.   FEMS MICROBIOLOGY ECOLOGY

Four decades of soil water stress history together with host genotype constrain the response of the wheat microbiome to soil moisture

(2020) Hamed Azarbad et al.   FEMS MICROBIOLOGY ECOLOGY

A plant genetic network for preventing dysbiosis in the phyllosphere

(2020) Tao Chen et al.   NATURE

The global burden of pathogens and pests on major food crops

(2019) Serge Savary et al.   Nature Ecology & Evolution

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Fusarium Head Blight Modifies Fungal Endophytic Communities During Infection of Wheat Spikes

(2019) Edward C. Rojas et al.   MICROBIAL ECOLOGY

Root-associated microbiomes of wheat under the combined effect of plant development and nitrogen fertilization

(2019) Shuaimin Chen et al.   Microbiome

Core Rhizosphere Microbiomes of Dryland Wheat Are Influenced by Location and Land Use History

(2019) Daniel C. Schlatter et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of two endophytic fungi that control Septoria tritici blotch in the field, using a structured screening approach

(2019) Meike A.C. Latz et al.   BIOLOGICAL CONTROL

Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection

(2019) Norma M. Morella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms

(2018) Ma del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Emerging microbial biocontrol strategies for plant pathogens

(2018) Sharifah Farhana Syed Ab Rahman et al.   PLANT SCIENCE

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

The wild side of plant microbiomes

(2018) Juan E. Pérez-Jaramillo et al.   Microbiome

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

Genome-wide association studies on the phyllosphere microbiome: Embracing complexity in host-microbe interactions

(2018) Kathleen Beilsmith et al.   PLANT JOURNAL

Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test

(2018) Yunshi Li et al.   Frontiers in Microbiology

Organic farming increases richness of fungal taxa in the wheat phyllosphere

(2017) Ida Karlsson et al.   MOLECULAR ECOLOGY

A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds

(2017) Birgit Mitter et al.   Frontiers in Microbiology

The Effects of Cropping Regimes on Fungal and Bacterial Communities of Wheat and Faba Bean in a Greenhouse Pot Experiment Differ between Plant Species and Compartment

(2017) Sandra Granzow et al.   Frontiers in Microbiology

Spatiotemporal Variation and Networks in the Mycobiome of the Wheat Canopy

(2017) Rumakanta Sapkota et al.   Frontiers in Plant Science

The fungal community changes over time in developing wheat heads

(2016) Morten Hertz et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies

(2016) Murali Gopal et al.   Frontiers in Microbiology

Spatial and Temporal Variation of Cultivable Communities of Co-occurring Endophytes and Pathogens in Wheat

(2016) Morgane Comby et al.   Frontiers in Microbiology

Plant-endophyte symbiosis, an ecological perspective

(2015) Zahoor Ahmed Wani et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes

(2015) Pablo R. Hardoim et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

ggplot2:Elegant Graphics for Data Analysis

(2015) Pedro M. Valero-Mora   Journal of Statistical Software

Food security: the challenge of increasing wheat yield and the importance of not compromising food safety

(2014) T. Curtis et al.   ANNALS OF APPLIED BIOLOGY

Fungal communities in wheat grain show significant co-existence patterns among species

(2014) M. Nicolaisen et al.   Fungal Ecology

Ecological Succession and Stochastic Variation in the Assembly of Arabidopsis thaliana Phyllosphere Communities

(2014) L. Maignien et al.   mBio

Genome-wide association study of Arabidopsis thaliana leaf microbial community

(2014) Matthew W. Horton et al.   Nature Communications

Vertical transmission of fungal endophytes is widespread in forbs

(2014) Susan Hodgson et al.   Ecology and Evolution

A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota

(2014) Natacha Bodenhausen et al.   PLoS Genetics

Improved Selection of Internal Transcribed Spacer-Specific Primers Enables Quantitative, Ultra-High-Throughput Profiling of Fungal Communities

(2013) Nicholas A. Bokulich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

(2013) Rachel I Adams et al.   ISME Journal

Comparison of sampling methods for the assessment of indoor microbial exposure

(2012) M. Frankel et al.   INDOOR AIR

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Harnessing the rhizosphere microbiome through plant breeding and agricultural management

(2012) Matthew G. Bakker et al.   PLANT AND SOIL

A multiparent advanced generation inter-cross population for genetic analysis in wheat

(2012) Bevan E. Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The dawn of symbiosis between plants and fungi

(2011) M. I. Bidartondo et al.   Biology Letters

Modulation of Host Immunity by Beneficial Microbes

(2011) Christos Zamioudis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Biological control of fusarium head blight of wheat withClonostachys roseastrain ACM941

(2010) A.G. Hue et al.   CANADIAN JOURNAL OF PLANT PATHOLOGY

Genetic Compatibility Determines Endophyte-Grass Combinations

(2010) Kari Saikkonen et al.   PLoS One

Crop Yield Gaps: Their Importance, Magnitudes, and Causes

(2009) David B. Lobell et al.   Annual Review of Environment and Resources

Modeling QTL for complex traits: detection and context for plant breeding

(2009) Mark Cooper et al.   CURRENT OPINION IN PLANT BIOLOGY

Contributions of disease resistance and escape to the control of septoria tritici blotch of wheat

(2009) L. S. Arraiano et al.   PLANT PATHOLOGY

Endophytes: An emerging tool for biological control

(2008) Paul A. Backman et al.   BIOLOGICAL CONTROL

Plant immune responses triggered by beneficial microbes

(2008) Saskia CM Van Wees et al.   CURRENT OPINION IN PLANT BIOLOGY