Transportome-wide engineering of Saccharomyces cerevisiae

Improvement of cis,cis-Muconic Acid Production in Saccharomyces cerevisiae through Biosensor-Aided Genome Engineering

(2020) Guokun Wang et al.   ACS Synthetic Biology

High-Resolution Scanning of Optimal Biosensor Reporter Promoters in Yeast

(2020) Francesca Ambri et al.   ACS Synthetic Biology

Yeast Systems Biology: Model organism and Cell Factory

(2019) Jens Nielsen   Biotechnology Journal

RNAi expression tuning, microfluidic screening, and genome recombineering for improved protein production in Saccharomyces cerevisiae

(2019) Guokun Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lysine harvesting is an antioxidant strategy and triggers underground polyamine metabolism

(2019) Viridiana Olin-Sandoval et al.   NATURE

Targeting metabolic driving and intermediate influx in lysine catabolism for high-level glutarate production

(2019) Wenna Li et al.   Nature Communications

Iterative screening methodology enables isolation of strains with improved properties for a FACS-based screen and increased L-DOPA production

(2019) Judy Savitskaya et al.   Scientific Reports

Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli

(2019) Srijan Jindal et al.   BMC MICROBIOLOGY

Engineering energetically efficient transport of dicarboxylic acids in yeast Saccharomyces cerevisiae

(2019) Behrooz Darbani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution-guided engineering of small-molecule biosensors

(2019) Tim Snoek et al.   NUCLEIC ACIDS RESEARCH

Adaptive laboratory evolution of tolerance to dicarboxylic acids in Saccharomyces cerevisiae

(2019) Rui Pereira et al.   METABOLIC ENGINEERING

Energetic evolution of cellular Transportomes

(2018) Behrooz Darbani et al.   BMC GENOMICS

Heterologous transporter expression for improved fatty alcohol secretion in yeast

(2018) Yating Hu et al.   METABOLIC ENGINEERING

Multiplexed precision genome editing with trackable genomic barcodes in yeast

(2018) Kevin R Roy et al.   NATURE BIOTECHNOLOGY

An Orthogonal and pH-Tunable Sensor-Selector for Muconic Acid Biosynthesis in Yeast

(2018) Tim Snoek et al.   ACS Synthetic Biology

Understanding metabolite transport gives an upper hand in strain development

(2018) Irina Borodina   Microbial Biotechnology

Comparison of the metabolic response to over-production of p -coumaric acid in two yeast strains

(2017) Angelica Rodriguez et al.   METABOLIC ENGINEERING

EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9

(2016) Mathew M Jessop-Fabre et al.   Biotechnology Journal

Engineering cofactor and transport mechanisms in Saccharomyces cerevisiae for enhanced acetyl-CoA and polyketide biosynthesis

(2016) Javier Cardenas et al.   METABOLIC ENGINEERING

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

(2016) Andrew D Garst et al.   NATURE BIOTECHNOLOGY

Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast

(2016) Mette L Skjoedt et al.   Nature Chemical Biology

EasyClone-MarkerFree: A vector toolkit for marker-less integration of genes intoSaccharomyces cerevisiaevia CRISPR-Cas9

(2016) Mathew M Jessop-Fabre et al.   Biotechnology Journal

Instability of Succinate Dehydrogenase in SDHD Polymorphism Connects Reactive Oxygen Species Production to Nuclear and Mitochondrial Genomic Mutations in Yeast

(2015) Ya-Lan Chang et al.   ANTIOXIDANTS & REDOX SIGNALING

Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae

(2015) Tadas Jakočiūnas et al.   METABOLIC ENGINEERING

SLC transporters as therapeutic targets: emerging opportunities

(2015) Lawrence Lin et al.   NATURE REVIEWS DRUG DISCOVERY

Identification of aluminium transport-related genes via genome-wide phenotypic screening of Saccharomyces cerevisiae

(2014) Nay M. Tun et al.   Metallomics

Metabolic engineering of Corynebacterium glutamicum for L-arginine production

(2014) Seok Hyun Park et al.   Nature Communications

Exosomes as new vesicular lipid transporters involved in cell–cell communication and various pathophysiologies

(2013) Michel Record et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

EasyClone: method for iterative chromosomal integration of multiple genes inSaccharomyces cerevisiae

(2013) Niels B. Jensen et al.   FEMS YEAST RESEARCH

The ABCs of membrane transporters in health and disease (SLC series): Introduction

(2013) Matthias A. Hediger et al.   MOLECULAR ASPECTS OF MEDICINE

Transporter-mediated biofuel secretion

(2013) R. Doshi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutrient transporters: the Achilles’ heel of anabolism

(2013) Alison N. McCracken et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Biosynthesis of betalains: yellow and violet plant pigments

(2013) Fernando Gandía-Herrero et al.   TRENDS IN PLANT SCIENCE

Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries

(2012) Kuk-Ki Hong et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Metabolic engineering of recombinant protein secretion by Saccharomyces cerevisiae

(2012) Jin Hou et al.   FEMS YEAST RESEARCH

Modular Pathway Engineering of Diterpenoid Synthases and the Mevalonic Acid Pathway for Miltiradiene Production

(2012) Yongjin J. Zhou et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase

(2012) Elizabeth A Manrao et al.   NATURE BIOTECHNOLOGY

A stable yeast strain efficiently producing cholesterol instead of ergosterol is functional for tryptophan uptake, but not weak organic acid resistance

(2011) Cleiton M. Souza et al.   METABOLIC ENGINEERING

The food additive vanillic acid controls transgene expression in mammalian cells and mice

(2011) Marc Gitzinger et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

YTPdb: A wiki database of yeast membrane transporters

(2010) Sylvain Brohée et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Identification of genes that enhance cellulase protein production in yeast

(2010) Takao Kitagawa et al.   JOURNAL OF BIOTECHNOLOGY

Metabolic engineering of Saccharomyces cerevisiae for the biotechnological production of succinic acid

(2010) Andreas M. Raab et al.   METABOLIC ENGINEERING

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

TransportTP: A two-phase classification approach for membrane transporter prediction and characterization

(2009) Haiquan Li et al.   BMC BIOINFORMATICS

Metabolic engineering ofSaccharomyces cerevisiae for production of carboxylic acids: current status and challenges

(2009) Derek A. Abbott et al.   FEMS YEAST RESEARCH