Enhancer RNAs: transcriptional regulators and workmates of NamiRNAs in myogenesis

CDR1as/miRNAs-related regulatory mechanisms in muscle development and diseases

(2020) Bismark Kyei et al.   GENE

Diversity and Emerging Roles of Enhancer RNA in Regulation of Gene Expression and Cell Fate

(2020) Preston R. Arnold et al.   Frontiers in Cell and Developmental Biology

AP001056.1, A Prognosis-Related Enhancer RNA in Squamous Cell Carcinoma of the Head and Neck

(2019) Xiaolian Gu et al.   Cancers

Wnt/β‐catenin signaling induces the myomiRs miR‐133b and miR‐206 to suppress Pax7 and induce the myogenic differentiation program

(2019) Shuang Cui et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

High-Throughput Analysis Reveals Rules for Target RNA Binding and Cleavage by AGO2

(2019) Winston R. Becker et al.   MOLECULAR CELL

Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer

(2019) Zhao Zhang et al.   Nature Communications

MyoD induced enhancer RNA interacts with hnRNPL to activate target gene transcription during myogenic differentiation

(2019) Yu Zhao et al.   Nature Communications

Knockdown of long non-coding RNA MAP3K20 antisense RNA 1 inhibits gastric cancer growth through epigenetically regulating miR-375

(2018) Yongsheng Quan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

(2018) Olga Mikhaylichenko et al.   GENES & DEVELOPMENT

Nuclear functions of mammalian MicroRNAs in gene regulation, immunity and cancer

(2018) Hongyu Liu et al.   Molecular Cancer

A Muscle-Specific Enhancer RNA Mediates Cohesin Recruitment and Regulates Transcription In trans

(2018) Pei-Fang Tsai et al.   MOLECULAR CELL

miRNA activation is an endogenous gene expression pathway

(2018) Luis M. Vaschetto   RNA Biology

Enhancer RNAs (eRNAs): New Insights into Gene Transcription and Disease Treatment

(2018) Mengting Ding et al.   Journal of Cancer

The Micro-RNA Expression Profiles of Autoimmune Arthritis Reveal Novel Biomarkers of the Disease and Therapeutic Response

(2018) Steven Dudics et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Oestrogen promotes tumorigenesis of bladder cancer by inducing the enhancer RNA-eGREB1

(2018) Mengting Ding et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

Structure of activated transcription complex Pol II–DSIF–PAF–SPT6

(2018) Seychelle M. Vos et al.   NATURE

RNAs interact with BRD4 to promote enhanced chromatin engagement and transcription activation

(2018) Homa Rahnamoun et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Global transcriptional activity dynamics reveal functional enhancer RNAs

(2018) Yoon Jung Kim et al.   GENOME RESEARCH

Enhancer RNA and NFκB-dependent P300 regulation of ADAMDEC1

(2018) Lihua Shi et al.   MOLECULAR IMMUNOLOGY

microRNA-378 promotes autophagy and inhibits apoptosis in skeletal muscle

(2018) Yan Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The enhancer RNA lnc-SLC4A1-1 epigenetically regulates unexplained recurrent pregnancy loss (URPL) by activating CXCL8 and NF-kB pathway

(2018) Zhenyao Huang et al.   EBioMedicine

Expression of long non-coding RNAs in autoimmunity and linkage to enhancer function and autoimmune disease risk genetic variants

(2017) T.M. Aune et al.   JOURNAL OF AUTOIMMUNITY

Intragenic Enhancers Attenuate Host Gene Expression

(2017) Senthilkumar Cinghu et al.   MOLECULAR CELL

SERPINB2 is regulated by dynamic interactions with pause-release proteins and enhancer RNAs

(2017) Lihua Shii et al.   MOLECULAR IMMUNOLOGY

Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability

(2017) Gerson Rothschild et al.   TRENDS IN GENETICS

MicroRNA in Control of Gene Expression: An Overview of Nuclear Functions

(2016) Caterina Catalanotto et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Human Argonaute 2 Is Tethered to Ribosomal RNA through MicroRNA Interactions

(2016) Blake L. Atwood et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Noncoding RNAs in the regulation of skeletal muscle biology in health and disease

(2016) Adriana Simionescu-Bankston et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Epstein–Barr virus super-enhancer eRNAs are essential for MYC oncogene expression and lymphoblast proliferation

(2016) Jun Liang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNAs activate gene transcription epigenetically as an enhancer trigger

(2016) Min Xiao et al.   RNA Biology

Epigenetic Regulation of miR-129-2 Leads to Overexpression of PDGFRa and FoxP1 in Glioma Cells

(2015) Xiang-Yang Tian et al.   Asian Pacific Journal of Cancer Prevention

microRNAs as pharmacogenomic biomarkers for drug efficacy and drug safety assessment

(2015) Igor Koturbash et al.   Biomarkers in Medicine

RNA Exosome-Regulated Long Non-Coding RNA Transcription Controls Super-Enhancer Activity

(2015) Evangelos Pefanis et al.   CELL

A Long Non-coding RNA, LncMyoD, Regulates Skeletal Muscle Differentiation by Blocking IMP2-Mediated mRNA Translation

(2015) Chenguang Gong et al.   DEVELOPMENTAL CELL

Enhancer-associated RNAs as therapeutic targets

(2015) Nicolas Léveillé et al.   EXPERT OPINION ON BIOLOGICAL THERAPY

Malat1 regulates serum response factor through miR-133 as a competing endogenous RNA in myogenesis

(2015) Xiaorui Han et al.   FASEB JOURNAL

Downregulated miR-495 Inhibits the G1-S Phase Transition by Targeting Bmi-1 in Breast Cancer

(2015) Lan Wang et al.   MEDICINE

Epigenetic silencing of miR-137 is a frequent event in gastric carcinogenesis

(2015) Ruta Steponaitiene et al.   MOLECULAR CARCINOGENESIS

Condensin I and II Complexes License Full Estrogen Receptor α-Dependent Enhancer Activation

(2015) Wenbo Li et al.   MOLECULAR CELL

Integrator mediates the biogenesis of enhancer RNAs

(2015) Fan Lai et al.   NATURE

RNA transcribed from a distal enhancer is required for activating the chromatin at the promoter of the gonadotropin α-subunit gene

(2015) Lilach Pnueli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription factor trapping by RNA in gene regulatory elements

(2015) A. A. Sigova et al.   SCIENCE

Let-7 miRNAs Modulate the Activation of NF-κB by Targeting TNFAIP3 and Are Involved in the Pathogenesis of Lupus Nephritis

(2015) Jun Liu et al.   PLoS One

Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues

(2015) Jen-Hao Cheng et al.   Scientific Reports

Transcriptional regulation mechanism mediated by miRNA–DNA•DNA triplex structure stabilized by Argonaute

(2014) Julia D. Toscano-Garibay et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

MYC through miR-17-92 Suppresses Specific Target Genes to Maintain Survival, Autonomous Proliferation, and a Neoplastic State

(2014) Yulin Li et al.   CANCER CELL

The contribution of co-transcriptional RNA:DNA hybrid structures to DNA damage and genome instability

(2014) Stephan Hamperl et al.   DNA REPAIR

The H19 long noncoding RNA gives rise to microRNAs miR-675-3p and miR-675-5p to promote skeletal muscle differentiation and regeneration

(2014) B. K. Dey et al.   GENES & DEVELOPMENT

miR-155 Promotes T Follicular Helper Cell Accumulation during Chronic, Low-Grade Inflammation

(2014) Ruozhen Hu et al.   IMMUNITY

Goat activin receptor type IIB knockdown by muscle specific promoter driven artificial microRNAs

(2014) Amrutlal K. Patel et al.   JOURNAL OF BIOTECHNOLOGY

MUNC, a Long Noncoding RNA That Facilitates the Function of MyoD in Skeletal Myogenesis

(2014) Adam C. Mueller et al.   MOLECULAR AND CELLULAR BIOLOGY

An atlas of active enhancers across human cell types and tissues

(2014) Robin Andersson et al.   NATURE

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation

(2014) C.-L. Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A novel HIV-1-encoded microRNA enhances its viral replication by targeting the TATA box region

(2014) Yijun Zhang et al.   Retrovirology

RNAi Factors Are Present and Active in Human Cell Nuclei

(2014) Keith T. Gagnon et al.   Cell Reports

Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells

(2014) Nicolas Descostes et al.   eLife

Long noncoding RNAs, emerging players in muscle differentiation and disease

(2014) Maria Neguembor et al.   Skeletal Muscle

Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis

(2013) Leina Lu et al.   EMBO JOURNAL

eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci

(2013) Kambiz Mousavi et al.   MOLECULAR CELL

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation

(2013) Wenbo Li et al.   NATURE

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription

(2013) Fan Lai et al.   NATURE

mRNA–mRNA duplexes that autoelicit Staufen1-mediated mRNA decay

(2013) Chenguang Gong et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Promoter RNA links transcriptional regulation of inflammatory pathway genes

(2013) Masayuki Matsui et al.   NUCLEIC ACIDS RESEARCH

Identification of an Enhancer That Increases miR-200b~200a~429 Gene Expression in Breast Cancer Cells

(2013) Joanne L. Attema et al.   PLoS One

Dynamic Localisation of Mature MicroRNAs in Human Nucleoli is Influenced by Exogenous Genetic Materials

(2013) Zhou Fang Li et al.   PLoS One

Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals

(2012) Ryuya Fukunaga et al.   CELL

Transcriptional Dominance of Pax7 in Adult Myogenesis Is Due to High-Affinity Recognition of Homeodomain Motifs

(2012) Vahab D. Soleimani et al.   DEVELOPMENTAL CELL

Enhancers: emerging roles in cell fate specification

(2012) Chin-Tong Ong et al.   EMBO REPORTS

eRNAs Are Required for p53-Dependent Enhancer Activity and Gene Transcription

(2012) Carlos A. Melo et al.   MOLECULAR CELL

Autoregulation of microRNA biogenesis by let-7 and Argonaute

(2012) Dimitrios G. Zisoulis et al.   NATURE

Landscape of transcription in human cells

(2012) Sarah Djebali et al.   NATURE

Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation

(2012) Farzaneh Modarresi et al.   NATURE BIOTECHNOLOGY

MicroRNA-22 and microRNA-140 suppress NF-κB activity by regulating the expression of NF-κB coactivators

(2011) Akemi Takata et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

Mouse miRNA-709 directly regulates miRNA-15a/16-1 biogenesis at the posttranscriptional level in the nucleus: evidence for a microRNA hierarchy system

(2011) Rui Tang et al.   CELL RESEARCH

Expanding the action of duplex RNAs into the nucleus: redirecting alternative splicing

(2011) Jing Liu et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-205-directed transcriptional activation of tumor suppressor genes in prostate cancer

(2010) Shahana Majid et al.   CANCER

A Splicing-Independent Function of SF2/ASF in MicroRNA Processing

(2010) Han Wu et al.   MOLECULAR CELL

Widespread transcription at neuronal activity-regulated enhancers

(2010) Tae-Kyung Kim et al.   NATURE

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

(2010) Sihem Cheloufi et al.   NATURE

Steroid receptor RNA activator protein binds to and counteracts SRA RNA-mediated activation of MyoD and muscle differentiation

(2010) Florent Hubé et al.   NUCLEIC ACIDS RESEARCH

Predicting potential miRNA target sites within gene promoters

(2009) Scott T. Younger et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

Codependent Activators Direct Myoblast-Specific MyoD Transcription

(2008) Ping Hu et al.   DEVELOPMENTAL CELL

Most mammalian mRNAs are conserved targets of microRNAs

(2008) R. C. Friedman et al.   GENOME RESEARCH

MicroRNA-10a Binds the 5′UTR of Ribosomal Protein mRNAs and Enhances Their Translation

(2008) Ulf Andersson Ørom et al.   MOLECULAR CELL

Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells

(2008) Thomas Ohrt et al.   NUCLEIC ACIDS RESEARCH

MicroRNA-directed transcriptional gene silencing in mammalian cells

(2008) D. H. Kim et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroRNA-373 induces expression of genes with complementary promoter sequences

(2008) R. F. Place et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA