Global transcriptional activity dynamics reveal functional enhancer RNAs
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Global transcriptional activity dynamics reveal functional enhancer RNAs
Authors
Keywords
-
Journal
GENOME RESEARCH
Volume 28, Issue 12, Pages 1799-1811
Publisher
Cold Spring Harbor Laboratory
Online
2018-10-24
DOI
10.1101/gr.233486.117
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Reconstruction of enhancer–target networks in 935 samples of human primary cells, tissues and cell lines
- (2017) Qin Cao et al. NATURE GENETICS
- Understanding nucleosome dynamics and their links to gene expression and DNA replication
- (2017) William K. M. Lai et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The distinct metabolic phenotype of lung squamous cell carcinoma defines selective vulnerability to glycolytic inhibition
- (2017) Justin Goodwin et al. Nature Communications
- Local regulation of gene expression by lncRNA promoters, transcription and splicing
- (2016) Jesse M. Engreitz et al. NATURE
- Enhancer–promoter interactions are encoded by complex genomic signatures on looping chromatin
- (2016) Sean Whalen et al. NATURE GENETICS
- Enhancers as non-coding RNA transcription units: recent insights and future perspectives
- (2016) Wenbo Li et al. NATURE REVIEWS GENETICS
- Single-cell profiling reveals that eRNA accumulation at enhancer–promoter loops is not required to sustain transcription
- (2016) Samir Rahman et al. NUCLEIC ACIDS RESEARCH
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Sumoylation coordinates the repression of inflammatory and anti-viral gene-expression programs during innate sensing
- (2015) Adrien Decque et al. NATURE IMMUNOLOGY
- Stimulus-specific combinatorial functionality of neuronal c-fos enhancers
- (2015) Jae-Yeol Joo et al. NATURE NEUROSCIENCE
- The selection and function of cell type-specific enhancers
- (2015) Sven Heinz et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
- (2015) Ivan V. Kulakovskiy et al. NUCLEIC ACIDS RESEARCH
- Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
- (2015) Erik Arner et al. SCIENCE
- Exploiting genomics and natural genetic variation to decode macrophage enhancers
- (2015) Casey E. Romanoski et al. TRENDS IN IMMUNOLOGY
- Pharmacophore Reassignment for Induction of the Immunosurveillance Cytokine TRAIL
- (2014) Nicholas T. Jacob et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Enhancer RNA Facilitates NELF Release from Immediate Early Genes
- (2014) Katie Schaukowitch et al. MOLECULAR CELL
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- A novel virus-inducible enhancer of the interferon-β gene with tightly linked promoter and enhancer activities
- (2014) A. Raja Banerjee et al. NUCLEIC ACIDS RESEARCH
- Enhancer transcripts mark active estrogen receptor binding sites
- (2013) N. Hah et al. GENOME RESEARCH
- eRNAs Promote Transcription by Establishing Chromatin Accessibility at Defined Genomic Loci
- (2013) Kambiz Mousavi et al. MOLECULAR CELL
- Remodeling of the Enhancer Landscape during Macrophage Activation Is Coupled to Enhancer Transcription
- (2013) Minna U. Kaikkonen et al. MOLECULAR CELL
- Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation
- (2013) Wenbo Li et al. NATURE
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade
- (2013) Y J Kim et al. ONCOGENE
- Software for Computing and Annotating Genomic Ranges
- (2013) Michael Lawrence et al. PLoS Computational Biology
- Macrophage-expressed IFN-β Contributes to Apoptotic Alveolar Epithelial Cell Injury in Severe Influenza Virus Pneumonia
- (2013) Katrin Högner et al. PLoS Pathogens
- eRNAs Are Required for p53-Dependent Enhancer Activity and Gene Transcription
- (2012) Carlos A. Melo et al. MOLECULAR CELL
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
- (2011) Dong Wang et al. NATURE
- Conserved, developmentally regulated mechanism couples chromosomal looping and heterochromatin barrier activity at the homeobox gene A locus
- (2011) Y. J. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Widespread transcription at neuronal activity-regulated enhancers
- (2010) Tae-Kyung Kim et al. NATURE
- A unique chromatin signature uncovers early developmental enhancers in humans
- (2010) Alvaro Rada-Iglesias et al. NATURE
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Exploring nonlinear feature space dimension reduction and data representation in breast CADx with Laplacian eigenmaps and t-SNE
- (2009) Andrew R. Jamieson et al. MEDICAL PHYSICS
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
- (2008) Da Wei Huang et al. NUCLEIC ACIDS RESEARCH
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search