Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession

Aridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands

(2014) Chao Wang et al.   Nature Communications

Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico

(2013) Nguyen E. López-Lozano et al.   PeerJ

Molecular ecological network analyses

(2012) Ye Deng et al.   BMC BIOINFORMATICS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Soil Microbial Community Successional Patterns during Forest Ecosystem Restoration

(2011) Natasha C. Banning et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

Effects of soil moisture on the temperature sensitivity of heterotrophic respiration vary seasonally in an old-field climate change experiment

(2011) Vidya Suseela et al.   GLOBAL CHANGE BIOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

(2011) Zhenmei Lu et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Metagenomic analysis reveals a marked divergence in the structure of belowground microbial communities at elevated CO2

(2010) Zhili He et al.   ECOLOGY LETTERS

Soil Carbon Accumulation During Temperate Forest Succession on Abandoned Low Productivity Agricultural Lands

(2010) Robyn L. Foote et al.   ECOSYSTEMS

The forgotten stage of forest succession: early-successional ecosystems on forest sites

(2010) Mark E Swanson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Microbial secondary succession in a chronosequence of chalk grasslands

(2010) Eiko E Kuramae et al.   ISME Journal

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China

(2010) Yuting Liang et al.   ISME Journal

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Changes through time: integrating microorganisms into the study of succession

(2010) Noah Fierer et al.   RESEARCH IN MICROBIOLOGY

Linking Microbial Community Structure and Function to Seasonal Differences in Soil Moisture and Temperature in a Chihuahuan Desert Grassland

(2009) Colin W. Bell et al.   MICROBIAL ECOLOGY

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Testing the assumptions of chronosequences in succession

(2008) Edward A. Johnson et al.   ECOLOGY LETTERS

Seasonal variation in enzyme activities and temperature sensitivities in Arctic tundra soils

(2008) MATTHEW D. WALLENSTEIN et al.   GLOBAL CHANGE BIOLOGY

Molecular eco-systems biology: towards an understanding of community function

(2008) Jeroen Raes et al.   NATURE REVIEWS MICROBIOLOGY

Positive interactions among plant species for pollinator service: assessing the ‘magnet species’ concept with invasive species

(2008) Marco A. Molina-Montenegro et al.   OIKOS

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Microbial biomass, functional capacity, and community structure after 12 years of soil warming

(2008) S.D. Frey et al.   SOIL BIOLOGY & BIOCHEMISTRY