Polygenic adaptation of rosette growth in Arabidopsis thaliana

In the presence of population structure: From genomics to candidate genes underlying local adaptation

(2020) Nicholas Price et al.   Ecology and Evolution

Adaptation and phenotypic diversification through loss-of-function mutations in Arabidopsis protein-coding genes

(2019) Yong-Chao Xu et al.   PLANT CELL

Seed traits are pleiotropically regulated by the flowering time gene PERPETUAL FLOWERING 1 ( PEP1 ) in the perennial Arabis alpina

(2019) Patrick William Hughes et al.   MOLECULAR ECOLOGY

The Effects of Demography and Genetics on the Neutral Distribution of Quantitative Traits

(2019) Evan M. Koch   GENETICS

Polygenic adaptation on height is overestimated due to uncorrected stratification in genome-wide association studies

(2019) Mashaal Sohail et al.   eLife

The fitness benefits of genetic variation in circadian clock regulation

(2019) Matti J Salmela et al.   CURRENT OPINION IN PLANT BIOLOGY

Assortment of flowering time and immunity alleles in natural Arabidopsis thaliana populations suggests immunity and vegetative lifespan strategies coevolve

(2018) Shirin Glander et al.   Genome Biology and Evolution

Accumulation of Mutational Load at the Edges of a Species Range

(2018) Yvonne Willi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Detecting the genomic signal of polygenic adaptation and the role of epistasis in evolution

(2018) Katalin Csilléry et al.   MOLECULAR ECOLOGY

Adaptive diversification of growth allometry in the plantArabidopsis thaliana

(2018) François Vasseur et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural variation in stomata size contributes to the local adaptation of water-use efficiency in Arabidopsis thaliana

(2018) Hannes Dittberner et al.   MOLECULAR ECOLOGY

Linking genes with ecological strategies in A rabidopsis thaliana

(2018) Margarita Takou et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Polygenic Genetic Architecture of Flowering Time in the Worldwide Arabidopsis thaliana Population

(2018) Yanjun Zan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function

(2018) J Grey Monroe et al.   eLife

Natural variation in life history strategy of Arabidopsis thaliana determines stress responses to drought and insects of different feeding guilds

(2017) Nelson H. Davila Olivas et al.   MOLECULAR ECOLOGY

A study of allelic diversity underlying flowering-time adaptation in maize landraces

(2017) J Alberto Romero Navarro et al.   NATURE GENETICS

The shade-avoidance syndrome: multiple signals and ecological consequences

(2017) Carlos L. Ballaré et al.   PLANT CELL AND ENVIRONMENT

African genomes illuminate the early history and transition to selfing inArabidopsis thaliana

(2017) Arun Durvasula et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of recent population history on the deleterious mutation load in humans and close evolutionary relatives

(2016) Yuval B Simons et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The Footprint of Polygenic Adaptation on Stress-ResponsiveCis-Regulatory Divergence in theArabidopsis Genus

(2016) Fei He et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular mechanisms of adaptation and speciation: why do we need an integrative approach?

(2016) Kelsey J. R. P. Byers et al.   MOLECULAR ECOLOGY

The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana

(2016) Matthew W. Horton et al.   PLANT CELL AND ENVIRONMENT

Detecting Polygenic Evolution: Problems, Pitfalls, and Promises

(2016) Maren Wellenreuther et al.   TRENDS IN GENETICS

Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis

(2016) Envel Kerdaffrec et al.   eLife

Paradigm shift in plant growth control

(2015) Christian Körner   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci

(2015) Johanna A. Bac-Molenaar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association mapping of time-dependent growth responses to moderate drought stress in Arabidopsis

(2015) Johanna A. Bac-Molenaar et al.   PLANT CELL AND ENVIRONMENT

Dose-Response Analysis Using R

(2015) Christian Ritz et al.   PLoS One

The roles of genetic drift and natural selection in quantitative trait divergence along an altitudinal gradient in Arabidopsis thaliana

(2014) Y Luo et al.   HEREDITY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Natural diversity in daily rhythms of gene expression contributes to phenotypic variation

(2014) Amaury de Montaigu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the accumulation of deleterious mutations during range expansions

(2013) S. Peischl et al.   MOLECULAR ECOLOGY

QST–FST comparisons: evolutionary and ecological insights from genomic heterogeneity

(2013) Tuomas Leinonen et al.   NATURE REVIEWS GENETICS

The advantages and limitations of trait analysis with GWAS: a review

(2013) Arthur Korte et al.   Plant Methods

Co-Variation between Seed Dormancy, Growth Rate and Flowering Time Changes with Latitude in Arabidopsis thaliana

(2013) Marilyne Debieu et al.   PLoS One

Flagellin Perception Varies Quantitatively in Arabidopsis thaliana and Its Relatives

(2012) M. M. Vetter et al.   MOLECULAR BIOLOGY AND EVOLUTION

Among- and within-population variation in flowering time of IberianArabidopsis thalianaestimated in field and glasshouse conditions

(2012) Belén Méndez-Vigo et al.   NEW PHYTOLOGIST

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling

(2012) Patricia Hornitschek et al.   PLANT JOURNAL

A Genome-Wide Association Study Identifies Variants Underlying the Arabidopsis thaliana Shade Avoidance Response

(2012) Daniele L. Filiault et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

BBX32, an Arabidopsis B-Box Protein, Functions in Light Signaling by Suppressing HY5-Regulated Gene Expression and Interacting with STH2/BBX21

(2011) H. E. Holtan et al.   PLANT PHYSIOLOGY

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

(2010) G. Yu et al.   BIOINFORMATICS

Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana

(2010) Marco Todesco et al.   NATURE

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana

(2010) Joy Bergelson et al.   NATURE REVIEWS GENETICS

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Testing for Spatially Divergent Selection: Comparing QST to FST

(2009) M. C. Whitlock et al.   GENETICS

How alpine plant growth is linked to snow cover and climate variability

(2008) Tobias Jonas et al.   JOURNAL OF GEOPHYSICAL RESEARCH

Shade avoidance

(2008) Keara A. Franklin   NEW PHYTOLOGIST