Metabolomics: a systems biology approach for enhancing heat stress tolerance in plants

Differential physiological, transcriptomic and metabolomic responses of Arabidopsis leaves under prolonged warming and heat shock

(2020) Li Wang et al.   BMC PLANT BIOLOGY

Distinct Metabolome Changes during Seed Germination of Lettuce (Lactuca sativa L.) in Response to Thermal Stress as Revealed by Untargeted Metabolomics Analysis

(2020) Shiwei Wei et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Re-epithelialization and immune cell behaviour in an ex vivo human skin model

(2020) Ana Rakita et al.   Scientific Reports

Effect of Heat Stress on Sargassum fusiforme Leaf Metabolome

(2020) Lijie Liu et al.   JOURNAL OF PLANT BIOLOGY

Reactive Oxygen Species and Antioxidant Defense in Plants under Abiotic Stress: Revisiting the Crucial Role of a Universal Defense Regulator

(2020) Mirza Hasanuzzaman et al.   Antioxidants

Eco-physiological and Biochemical Responses of Rapeseed (Brassica napus L.) to Abiotic Stresses: Consequences and Mitigation Strategies

(2020) Ali Raza   JOURNAL OF PLANT GROWTH REGULATION

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

(2019) Jüri Reimand et al.   Nature Protocols

Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions

(2019) Lovely Mae F Lawas et al.   GigaScience

Transcriptomic and Metabolomic Analysis of the Heat-Stress Response of Populus tomentosa Carr.

(2019) Shixiong Ren et al.   Forests

Evaluation of grain yield in fifty-eight spring bread wheat genotypes grown under heat stress

(2019) Khair Mohammad Youldash et al.   PAKISTAN JOURNAL OF BOTANY

Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress

(2019) Jing Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Metabolic Dynamics of Developing Rice Seeds Under High Night-Time Temperature Stress

(2019) Balpreet K. Dhatt et al.   Frontiers in Plant Science

Metabolomics: A Way Forward for Crop Improvement

(2019) Ali Razzaq et al.   Metabolites

Multi-omics in high-grade serous ovarian cancer: Biomarkers from genome to the immunome

(2018) Cole Clifford et al.   AMERICAN JOURNAL OF REPRODUCTIVE IMMUNOLOGY

Grain yield of wheat (Triticum aestivum L.) under long-term heat stress is sink-limited with stronger inhibition of kernel setting than grain filling

(2018) Birgit W. Hütsch et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions

(2018) Si Wu et al.   Molecular Plant

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis

(2018) Jasmine Chong et al.   NUCLEIC ACIDS RESEARCH

Metabolomics 20 years on: what have we learned and what hurdles remain?

(2018) Saleh Alseekh et al.   PLANT JOURNAL

Systematic biology analysis on photosynthetic carbon metabolism of maize leaf following sudden heat shock under elevated CO2

(2018) Mingnan Qu et al.   Scientific Reports

Global analysis of threonine metabolism genes unravel key players in rice to improve the abiotic stress tolerance

(2018) Pandiyan Muthuramalingam et al.   Scientific Reports

CE-MS for metabolomics: developments and applications in the period 2016-2018

(2018) Rawi Ramautar et al.   ELECTROPHORESIS

New methods to identify high peak density artifacts in Fourier transform mass spectra and to mitigate their effects on high-throughput metabolomic data analysis

(2018) Joshua M. Mitchell et al.   Metabolomics

Metabolic GWAS-based dissection of genetic bases underlying the diversity of plant metabolism

(2018) Chuanying Fang et al.   PLANT JOURNAL

A “Soft” and “Hard” Ionization Method for Comprehensive Studies of Molecules

(2018) Yan Wang et al.   ANALYTICAL CHEMISTRY

Accelerating Metabolite Identification in Natural Product Research: Toward an Ideal Combination of Liquid Chromatography–High-Resolution Tandem Mass Spectrometry and NMR Profiling, in Silico Databases, and Chemometrics

(2018) Jean-Luc Wolfender et al.   ANALYTICAL CHEMISTRY

Flavonols control pollen tube growth and integrity by regulating ROS homeostasis during high-temperature stress

(2018) Joëlle K. Muhlemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploring the Diversity of Plant Metabolism

(2018) Chuanying Fang et al.   TRENDS IN PLANT SCIENCE

Contribution of Untargeted Metabolomics for Future Assessment of Biotech Crops

(2018) Bastien Christ et al.   TRENDS IN PLANT SCIENCE

Heat Stress Tolerance in Rice (Oryza sativa L.): Identification of Quantitative Trait Loci and Candidate Genes for Seedling Growth Under Heat Stress

(2018) Newton Lwiyiso Kilasi et al.   Frontiers in Plant Science

Screening for pollen tolerance to high temperatures in tomato

(2017) Marine J. Paupière et al.   EUPHYTICA

Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense

(2017) Sven Eduard Templer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Proteomics survey of Solanaceae family: Current status and challenges ahead

(2017) Arindam Ghatak et al.   Journal of Proteomics

Metabolomics as a tool for understanding the evolution of Tabebuia sensu lato

(2017) Vanessa Samúdio dos Santos et al.   Metabolomics

Chromatographic profiling of Pancharishta at different stages of its development using HPTLC, HPLC, GC–MS and UPLC–MS

(2017) Washim Khan et al.   Phytochemistry Letters

Stress-Inducible Galactinol Synthase of Chickpea (CaGolS) is Implicated in Heat and Oxidative Stress Tolerance Through Reducing Stress-Induced Excessive Reactive Oxygen Species Accumulation

(2017) Prafull Salvi et al.   PLANT AND CELL PHYSIOLOGY

Sugars, antioxidant enzymes and IAA mediate salicylic acid to prevent rice spikelet degeneration caused by heat stress

(2017) C. X. Zhang et al.   PLANT GROWTH REGULATION

Evolutionary Transcriptomics and Proteomics: Insight into Plant Adaptation

(2017) Claudia Voelckel et al.   TRENDS IN PLANT SCIENCE

Effects of Drought, Heat and Their Interaction on the Growth, Yield and Photosynthetic Function of Lentil (Lens culinaris Medikus) Genotypes Varying in Heat and Drought Sensitivity

(2017) Akanksha Sehgal et al.   Frontiers in Plant Science

Linking the morphological and metabolomic response of Lactuca sativa L exposed to emerging contaminants using GC × GC-MS and chemometric tools

(2017) Carlos Hurtado et al.   Scientific Reports

Omics data input for metabolic modeling

(2016) Amit Rai et al.   CURRENT OPINION IN BIOTECHNOLOGY

Chemical Assignment of Structural Isomers of Sulfur-Containing Metabolites in Garlic by Liquid Chromatography−Fourier Transform Ion Cyclotron Resonance−Mass Spectrometry

(2016) Ryo Nakabayashi et al.   JOURNAL OF NUTRITION

Computational tools and workflows in metabolomics: An international survey highlights the opportunity for harmonisation through Galaxy

(2016) Ralf J. M. Weber et al.   Metabolomics

Mass-spectrometric exploration of proteome structure and function

(2016) Ruedi Aebersold et al.   NATURE

SPLASH, a hashed identifier for mass spectra

(2016) Gert Wohlgemuth et al.   NATURE BIOTECHNOLOGY

System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance

(2016) Lei Wang et al.   PLANT JOURNAL

Data analysis strategies for targeted and untargeted LC-MS metabolomic studies: Overview and workflow

(2016) Eva Gorrochategui et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Mass spectral databases for LC/MS- and GC/MS-based metabolomics: State of the field and future prospects

(2016) Maria Vinaixa et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Combined Use of Genome-Wide Association Data and Correlation Networks Unravels Key Regulators of Primary Metabolism in Arabidopsis thaliana

(2016) Si Wu et al.   PLoS Genetics

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles

(2016) Oswaldo Valdés-López et al.   Frontiers in Plant Science

Non-targeted Metabolomics in Diverse Sorghum Breeding Lines Indicates Primary and Secondary Metabolite Profiles Are Associated with Plant Biomass Accumulation and Photosynthesis

(2016) Marie F. Turner et al.   Frontiers in Plant Science

Pollen proteomics: from stress physiology to developmental priming

(2016) Palak Chaturvedi et al.   Plant Reproduction

Significance of sulfur in heat stressed cluster bean (Cymopsis tetragonoloba L. Taub) genotypes: responses of growth, sugar and antioxidative metabolism

(2016) Mohammad Mobin et al.   Archives of Agronomy and Soil Science

The Nagoya Protocol on Access and Benefit Sharing

(2015) Myrna E. Watanabe   BIOSCIENCE

Meta-Analysis of Wheat QTL Regions Associated with Adaptation to Drought and Heat Stress

(2015) M. Andrea Acuña-Galindo et al.   CROP SCIENCE

Integrated metabolomics for abiotic stress responses in plants

(2015) Ryo Nakabayashi et al.   CURRENT OPINION IN PLANT BIOLOGY

Analysis of Phenolic and Cyclic Compounds in Plants Using Derivatization Techniques in Combination with GC-MS-Based Metabolite Profiling

(2015) Jens Rohloff   MOLECULES

Patterns of Metabolite Changes Identified from Large-Scale Gene Perturbations in Arabidopsis Using a Genome-Scale Metabolic Network

(2015) Taehyong Kim et al.   PLANT PHYSIOLOGY

Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics

(2014) F. Giacomoni et al.   BIOINFORMATICS

Metabolomics reveals organ-specific metabolic rearrangements during early tomato seedling development

(2014) Maria Victoria Gomez Roldan et al.   Metabolomics

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism

(2014) Fumio Matsuda et al.   PLANT JOURNAL

A universal protocol for the combined isolation of metabolites, DNA, long RNAs, small RNAs, and proteins from plants and microorganisms

(2014) Luis Valledor et al.   PLANT JOURNAL

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

(2014) C. Sauvage et al.   PLANT PHYSIOLOGY

Solving the Differential Biochemical Jacobian from Metabolomics Covariance Data

(2014) Thomas Nägele et al.   PLoS One

Physiological, Biochemical, and Molecular Mechanisms of Heat Stress Tolerance in Plants

(2013) Mirza Hasanuzzaman et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genetic analysis of the metabolome exemplified using a rice population

(2013) L. Gong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems analysis of metabolic phenotypes: what have we learnt?

(2013) Lee J. Sweetlove et al.   TRENDS IN PLANT SCIENCE

Data reuse and the open data citation advantage

(2013) Heather A. Piwowar et al.   PeerJ

Genomic and metabolic prediction of complex heterotic traits in hybrid maize

(2012) Christian Riedelsheimer et al.   NATURE GENETICS

Mining the Biodiversity of Plants: A Revolution in the Making

(2012) V. De Luca et al.   SCIENCE

Green systems biology — From single genomes, proteomes and metabolomes to ecosystems research and biotechnology

(2011) Wolfram Weckwerth   Journal of Proteomics

LC-MS based global metabolite profiling of grapes: solvent extraction protocol optimisation

(2011) Georgios Theodoridis et al.   Metabolomics

Characterization of metabolite quantitative trait loci and metabolic networks that control glucosinolate concentration in the seeds and leaves of Brassica napus

(2011) Ji Feng et al.   NEW PHYTOLOGIST

Advances in Mass Spectrometry for Lipidomics

(2010) Stephen J. Blanksby et al.   Annual Review of Analytical Chemistry

Biodegradation pathway of mesotrione: Complementarities of NMR, LC–NMR and LC–MS for qualitative and quantitative metabolic profiling

(2010) Stéphanie Durand et al.   CHEMOSPHERE

‘Omics’ analyses of regulatory networks in plant abiotic stress responses

(2010) Kaoru Urano et al.   CURRENT OPINION IN PLANT BIOLOGY

NMR-based metabolomic analysis of plants

(2010) Hye Kyong Kim et al.   Nature Protocols

Integration of metabolomics and proteomics in molecular plant physiology - coping with the complexity by data-dimensionality reduction

(2010) Wolfram Weckwerth   PHYSIOLOGIA PLANTARUM

MetaboliteDetector: Comprehensive Analysis Tool for Targeted and Nontargeted GC/MS Based Metabolome Analysis

(2009) Karsten Hiller et al.   ANALYTICAL CHEMISTRY

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

Metabolomics: A New Frontier for Research in Pediatrics

(2009) Silvia Carraro et al.   JOURNAL OF PEDIATRICS

Analytical and statistical approaches to metabolomics research

(2009) Haleem J. Issaq et al.   JOURNAL OF SEPARATION SCIENCE

An introduction to liquid chromatography–mass spectrometry instrumentation applied in plant metabolomic analyses

(2009) J. William Allwood et al.   PHYTOCHEMICAL ANALYSIS

Sample preparation for plant metabolomics

(2009) Hye Kyong Kim et al.   PHYTOCHEMICAL ANALYSIS

Widespread changes in protein synthesis induced by microRNAs

(2008) Matthias Selbach et al.   NATURE

Applications and opportunities for ultrasound assisted extraction in the food industry — A review

(2007) Kamaljit Vilkhu et al.   Innovative Food Science & Emerging Technologies