Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress

Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat

(2019) Xiaoming Wang et al.   PLANT JOURNAL

A rice gene, OsPL, encoding a MYB family transcription factor confers anthocyanin synthesis, heat stress response and hormonal signaling

(2019) Delara Akhter et al.   GENE

OUP accepted manuscript

(2018)   BIOINFORMATICS

Rewiring of the Fruit Metabolome in Tomato Breeding

(2018) Guangtao Zhu et al.   CELL

Physiological and transcriptomic analysis revealed the involvement of crucial factors in heat stress response of Rhododendron hainanense

(2018) Ying Zhao et al.   GENE

Impact of heat stress during seed filling on seed quality and seed yield in lentil (Lens culinaris Medikus) genotypes

(2018) Kumari Sita et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Metabolome Integrated Analysis of High-Temperature Response in Pinus radiata

(2018) Mónica Escandón et al.   Frontiers in Plant Science

Characterization and Functional Analysis of FaHsfC1b from Festuca arundinacea Conferring Heat Tolerance in Arabidopsis

(2018) Lili Zhuang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Overexpressing heat-shock protein OsHSP50.2 improves drought tolerance in rice

(2018) Jianhua Xiang et al.   PLANT CELL REPORTS

Metabolomics Analysis Reveals the Salt-Tolerant Mechanism in Glycine soja

(2017) Dong-shuang Yang et al.   JOURNAL OF PLANT GROWTH REGULATION

PepperHub, an Informatics Hub for the Chili Pepper Research Community

(2017) Feng Liu et al.   Molecular Plant

Comparative Proteomic Analysis of Flag Leaves Reveals New Insight into Wheat Heat Adaptation

(2017) Yunze Lu et al.   Frontiers in Plant Science

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

HsfA2 Controls the Activity of Developmentally and Stress-Regulated Heat Stress Protection Mechanisms in Tomato Male Reproductive Tissues

(2016) Sotirios Fragkostefanakis et al.   PLANT PHYSIOLOGY

Response of osmotic adjustment and ascorbate-glutathione cycle to heat stress in a heat-sensitive and a heat-tolerant genotype of wucai ( Brassica campestris L.)

(2016) Mingqian Zou et al.   SCIENTIA HORTICULTURAE

Impact of Phenylpropanoid Compounds on Heat Stress Tolerance in Carrot Cell Cultures

(2016) Mauro Commisso et al.   Frontiers in Plant Science

Plant GSTome: structure and functional role in xenome network and plant stress response

(2015) Nikolaos E Labrou et al.   CURRENT OPINION IN BIOTECHNOLOGY

CaWRKY6 transcriptionally activates CaWRKY40, regulates Ralstonia solanacearum resistance, and confers high-temperature and high-humidity tolerance in pepper

(2015) Hanyang Cai et al.   JOURNAL OF EXPERIMENTAL BOTANY

A stress-responsive NAC transcription factor SNAC3 confers heat and drought tolerance through modulation of reactive oxygen species in rice

(2015) Yujie Fang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptome analysis reveals differential transcription in heat-susceptible and heat-tolerant pepper (Capsicum annum L.) cultivars under heat stress

(2015) Tao Li et al.   JOURNAL OF PLANT BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Changes of transcriptome and proteome are associated with the enhanced post-anthesis high temperature tolerance induced by pre-anthesis heat priming in wheat

(2015) Caiyun Xin et al.   PLANT GROWTH REGULATION

Global Gene-Expression Analysis to Identify Differentially Expressed Genes Critical for the Heat Stress Response in Brassica rapa

(2015) Xiangshu Dong et al.   PLoS One

Cloning and expression analysis of heat-shock transcription factor gene CaHsfA2 from pepper (Capsicum annuum L.)

(2014) M. Guo et al.   GENETICS AND MOLECULAR RESEARCH

Impact of Transient Heat Stress on Polar Lipid Metabolism in Seedlings of Wheat Near-Isogenic Lines Contrasting in Resistance to Hessian Fly (Cecidomyiidae) Infestation

(2014) Yaleaka Currie et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Metabolomic analysis of extreme freezing tolerance in Siberian spruce (Picea obovata)

(2014) Liudmila Angelcheva et al.   NEW PHYTOLOGIST

Stitching together the Multiple Dimensions of Autophagy Using Metabolomics and Transcriptomics Reveals Impacts on Metabolism, Development, and Plant Responses to the Environment in Arabidopsis

(2014) C. Masclaux-Daubresse et al.   PLANT CELL

Sugar and Auxin Signaling Pathways Respond to High-Temperature Stress during Anther Development as Revealed by Transcript Profiling Analysis in Cotton

(2014) L. Min et al.   PLANT PHYSIOLOGY

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

The adaptation and mitigation potential of traditional agriculture in a changing climate

(2013) Miguel A. Altieri et al.   CLIMATIC CHANGE

Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection

(2013) Ulrike Bechtold et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics

(2013) Wei Chen et al.   Molecular Plant

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Flavonoids and amino acid regulation in Capsicum annuum L. by endophytic fungi under different heat stress regimes

(2013) Abdul Latif Khan et al.   SCIENTIA HORTICULTURAE

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

CaWRKY40, a WRKY protein of pepper, plays an important role in the regulation of tolerance to heat stress and resistance toRalstonia solanacearuminfection

(2012) FENG-FENG DANG et al.   PLANT CELL AND ENVIRONMENT

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

The plant heat stress transcription factor (Hsf) family: Structure, function and evolution

(2011) Klaus-Dieter Scharf et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue

(2011) Kyung-Hee Kim et al.   BIOTECHNOLOGY LETTERS

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Role of proline and glycinebetaine pretreatments in improving heat tolerance of sprouting sugarcane (Saccharum sp.) buds

(2011) Rizwan Rasheed et al.   PLANT GROWTH REGULATION

Drought and Salt Stress Tolerance of an Arabidopsis Glutathione S-Transferase U17 Knockout Mutant Are Attributed to the Combined Effect of Glutathione and Abscisic Acid

(2011) J.-H. Chen et al.   PLANT PHYSIOLOGY

Arabidopsis HsfB1 and HsfB2b Act as Repressors of the Expression of Heat-Inducible Hsfs But Positively Regulate the Acquired Thermotolerance

(2011) M. Ikeda et al.   PLANT PHYSIOLOGY

Proline Accumulation Is Inhibitory to Arabidopsis Seedlings during Heat Stress

(2011) W.-T. Lv et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of High-Temperature Stress in Developing Barley Caryopses: Early Stress Responses and Effects on Storage Compound Biosynthesis

(2010) Elke Mangelsen et al.   Molecular Plant

Heat perception and signalling in plants: a tortuous path to thermotolerance

(2010) Younousse Saidi et al.   NEW PHYTOLOGIST

Metabolomics for plant stress response

(2010) Vladimir Shulaev et al.   PHYSIOLOGIA PLANTARUM

Differential metabolic responses of perennial grass Cynodon transvaalensis×Cynodon dactylon (C4) and Poa Pratensis (C3) to heat stress

(2010) Hongmei Du et al.   PHYSIOLOGIA PLANTARUM

Modulation of Transcriptome and Metabolome of Tobacco by Arabidopsis Transcription Factor, AtMYB12, Leads to Insect Resistance

(2010) P. Misra et al.   PLANT PHYSIOLOGY

Radically Rethinking Agriculture for the 21st Century

(2010) N. V. Fedoroff et al.   SCIENCE

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Specific Interaction between Tomato HsfA1 and HsfA2 Creates Hetero-oligomeric Superactivator Complexes for Synergistic Activation of Heat Stress Gene Expression

(2009) Kwan Yu Chan-Schaminet et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

Functional analysis of an Arabidopsis transcription factor WRKY25 in heat stress

(2009) Shujia Li et al.   PLANT CELL REPORTS

Heat shock protein 70 regulates the abscisic acid-induced antioxidant response of maize to combined drought and heat stress

(2009) Xiuli Hu et al.   PLANT GROWTH REGULATION

Heat stress-responsive transcriptome analysis in heat susceptible and tolerant wheat (Triticum aestivum L.) by using Wheat Genome Array

(2008) Dandan Qin et al.   BMC GENOMICS

The Arabidopsis glutathione transferase gene family displays complex stress regulation and co-silencing multiple genes results in altered metabolic sensitivity to oxidative stress

(2008) Pia G. Sappl et al.   PLANT JOURNAL

Effects of simultaneous drought and heat stress on Kentucky bluegrass

(2007) Jinrong Liu et al.   SCIENTIA HORTICULTURAE