Draft genome sequence of an inbred line ofChenopodium quinoa, an allotetraploid crop with great environmental adaptability and outstanding nutritional properties

Assembly of the draft genome of buckwheat and its applications in identifying agronomically useful genes

(2016) Yasuo Yasui et al.   DNA RESEARCH

Protein content and amino acids profile of pseudocereals

(2016) Carla Mota et al.   FOOD CHEMISTRY

Assessment of the nutritional composition of quinoa (Chenopodium quinoa Willd.)

(2016) Verena Nowak et al.   FOOD CHEMISTRY

Genome Survey Sequencing for the Characterization of the Genetic Background of Rosa roxburghii Tratt and Leaf Ascorbate Metabolism Genes

(2016) Min Lu et al.   PLoS One

Chenopodium polyploidy inferences from Salt Overly Sensitive 1 (SOS1 ) data

(2015) Brian M. Walsh et al.   AMERICAN JOURNAL OF BOTANY

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

Quinoa: Nutritional, functional, and antinutritional aspects

(2015) Antonio Manoel Maradini Filho et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Improvement of barley genome annotations by deciphering the Haruna Nijo genome

(2015) Kazuhiro Sato et al.   DNA RESEARCH

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales

(2015) Samuel F. Brockington et al.   NEW PHYTOLOGIST

Quinoa – a Model Crop for Understanding Salt-tolerance Mechanisms in Halophytes

(2015) K. B. Ruiz et al.   PLANT BIOSYSTEMS

The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome

(2015) Hiroaki Sakai et al.   Scientific Reports

The draft genome of Primula veris yields insights into the molecular basis of heterostyly

(2015) Michael D Nowak et al.   GENOME BIOLOGY

Optical mapping in plant comparative genomics

(2015) Haibao Tang et al.   GigaScience

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Breeding quinoa (Chenopodium quinoa Willd.): potential and perspectives

(2014) Andrés Zurita-Silva et al.   MOLECULAR BREEDING

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Qualitative De Novo Analysis of Full Length cDNA and Quantitative Analysis of Gene Expression for Common Marmoset (Callithrix jacchus) Transcriptomes Using Parallel Long-Read Technology and Short-Read Sequencing

(2014) Makiko Shimizu et al.   PLoS One

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

(2013) H. Hirakawa et al.   DNA RESEARCH

Sensitivity of Two Quinoa (ChenopodiumquinoaWilld.) Varieties to Progressive Drought Stress

(2013) Y. Sun et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Reduced Tonoplast Fast-Activating and Slow-Activating Channel Activity Is Essential for Conferring Salinity Tolerance in a Facultative Halophyte, Quinoa

(2013) E. Bonales-Alatorre et al.   PLANT PHYSIOLOGY

Cytogenetic analysis of quinoa chromosomes using nanoscale imaging and spectroscopy techniques

(2013) Zhong Yangquanwei et al.   Nanoscale Research Letters

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

(2012) Marcel H. Schulz et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Salt tolerance mechanisms in quinoa (Chenopodium quinoa Willd.)

(2012) Verena Isabelle Adolf et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Quality of prokaryote genome assembly: Indispensable issues of factors affecting prokaryote genome assembly quality

(2012) Adriana R. Carneiro et al.   GENE

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Structure and function of abscisic acid receptors

(2012) Takuya Miyakawa et al.   TRENDS IN PLANT SCIENCE

Single Nucleotide Polymorphism Identification, Characterization, and Linkage Mapping in Quinoa

(2012) P. J. Maughan et al.   Plant Genome

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Water Relations and Transpiration of Quinoa (Chenopodium quinoa Willd.) Under Salinity and Soil Drying

(2011) F. Razzaghi et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Genotypic Variation of Gas Exchange Parameters and Leaf Stable Carbon and Nitrogen Isotopes in Ten Quinoa Cultivars Grown under Drought

(2010) J. A. González et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Morphological Analysis of Quinoa Germplasm Grown Under Lowland Desert Conditions

(2010) F. Fuentes et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Ionic and osmotic relations in quinoa (Chenopodium quinoa Willd.) plants grown at various salinity levels

(2010) Y. Hariadi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Nutrition facts and functional potential of quinoa (Chenopodium quinoa willd.), an ancient Andean grain: a review

(2010) Antonio Vega-Gálvez et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Characterization of Salt Overly Sensitive 1 (SOS1) gene homoeologs in quinoa (Chenopodium quinoa Willd.)

(2009) P. J. Maughan et al.   GENOME

Nuclear genome size and chromosome analysis in Chenopodium quinoa and C. berlandieri subsp. nuttalliae

(2008) Guadalupe Palomino et al.   EUPHYTICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Re-Introduction of Quínoa into Arid Chile: Cultivation of Two Lowland Races under Extremely Low Irrigation

(2008) E. A. Martínez et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE