Improvement of barley genome annotations by deciphering the Haruna Nijo genome

In This Issue

(2015)   CELL

The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau

(2015) Xingquan Zeng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes

(2013) Tsuyoshi Tanaka et al.   BREEDING SCIENCE

Next-Generation Survey Sequencing and the Molecular Organization of Wheat Chromosome 6B

(2013) T. Tanaka et al.   DNA RESEARCH

Draft genome of the wheat A-genome progenitor Triticum urartu

(2013) Hong-Qing Ling et al.   NATURE

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

(2013) Jizeng Jia et al.   NATURE

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

(2013) Martin Mascher et al.   PLANT JOURNAL

A Sequence-Ready Physical Map of Barley Anchored Genetically by Two Million Single-Nucleotide Polymorphisms

(2013) R. Ariyadasa et al.   PLANT PHYSIOLOGY

Discovery of Novel Bmy1 Alleles Increasing β-Amylase Activity in Chinese Landraces and Tibetan Wild Barley for Improvement of Malting Quality via MAS

(2013) Xue Gong et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Single Nucleotide Polymorphism Mapping and Alignment of Recombinant Chromosome Substitution Lines in Barley

(2011) Kazuhiro Sato et al.   PLANT AND CELL PHYSIOLOGY

Comprehensive Sequence Analysis of 24,783 Barley Full-Length cDNAs Derived from 12 Clone Libraries

(2011) T. Matsumoto et al.   PLANT PHYSIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Development and implementation of high-throughput SNP genotyping in barley

(2009) Timothy J Close et al.   BMC GENOMICS

Development of 5006 Full-Length CDNAs in Barley: A Tool for Accessing Cereal Genomics Resources

(2009) K. Sato et al.   DNA RESEARCH

A high-density transcript linkage map of barley derived from a single population

(2009) K Sato et al.   HEREDITY

Highly Diversified Molecular Evolution of Downstream Transcription Start Sites in Rice and Arabidopsis

(2009) T. Tanaka et al.   PLANT PHYSIOLOGY

Cleistogamous flowering in barley arises from the suppression of microRNA-guided HvAP2 mRNA cleavage

(2009) S. K. Nair et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of internal structure of the nucleolar organizing region in rice (Oryza sativa L.)

(2008) H. Mizuno et al.   CYTOGENETIC AND GENOME RESEARCH