A multi‐omic analysis of the dorsal striatum in an animal model of divergent genetic risk for alcohol use disorder

TMTpro reagents: a set of isobaric labeling mass tags enables simultaneous proteome-wide measurements across 16 samples

(2020) Jiaming Li et al.   NATURE METHODS

Central dogma rates and the trade-off between precision and economy in gene expression

(2019) Jean Hausser et al.   Nature Communications

Proteomics Reveals Profound Metabolic Changes in the Alcohol Use Disorder Brain

(2019) Charmaine Enculescu et al.   ACS Chemical Neuroscience

ANK2 autism mutation targeting giant ankyrin-B promotes axon branching and ectopic connectivity

(2019) Rui Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Atypical complement receptor C5aR2 transports C5a to initiate neutrophil adhesion and inflammation

(2019) Yoshishige Miyabe et al.   Science Immunology

Genetic Selection for Alcohol Preference in Mice Alters Dorsal Striatum Neurotransmission

(2019) Brandon M. Fritz et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Alcohol metabolism contributes to brain histone acetylation

(2019) P. Mews et al.   NATURE

Recurrent functional misinterpretation of RNA-seq data caused by sample-specific gene length bias

(2019) Shir Mandelboum et al.   PLOS BIOLOGY

Hypusine biosynthesis in β cells links polyamine metabolism to facultative cellular proliferation to maintain glucose homeostasis

(2019) Esther M. Levasseur et al.   Science Signaling

Pan-cancer molecular subtypes revealed by mass-spectrometry-based proteomic characterization of more than 500 human cancers

(2019) Fengju Chen et al.   Nature Communications

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data

(2018) Rafael Hernández-de-Diego et al.   NUCLEIC ACIDS RESEARCH

The Aging Astrocyte Transcriptome from Multiple Regions of the Mouse Brain

(2018) Matthew M. Boisvert et al.   Cell Reports

Innate immune alterations are elicited in microglial cells before plaque deposition in the Alzheimer’s disease mouse model 5xFAD

(2018) Antonio Boza-Serrano et al.   Scientific Reports

MAP1B Light Chain Modulates Synaptic Transmission via AMPA Receptor Intracellular Trapping

(2017) Rocío Palenzuela et al.   JOURNAL OF NEUROSCIENCE

Alcohol induces input-specific aberrant synaptic plasticity in the rat dorsomedial striatum

(2017) Tengfei Ma et al.   NEUROPHARMACOLOGY

Alterations of expression of inflammation/immune-related genes in the dorsal and ventral striatum of adult C57BL/6J mice following chronic oxycodone self-administration: a RNA sequencing study

(2017) Yong Zhang et al.   PSYCHOPHARMACOLOGY

Neurofilaments and Neurofilament Proteins in Health and Disease

(2017) Aidong Yuan et al.   Cold Spring Harbor Perspectives in Biology

Mechanisms and Consequences of Dopamine Depletion-Induced Attenuation of the Spinophilin/Neurofilament Medium Interaction

(2017) Andrew C. Hiday et al.   NEURAL PLASTICITY

A Comprehensive Mouse Transcriptomic BodyMap across 17 Tissues by RNA-seq

(2017) Bin Li et al.   Scientific Reports

Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus

(2016) Samuel Kohtala et al.   ACS Chemical Neuroscience

Impact of the Innate Immune Response in the Actions of Ethanol on the Central Nervous System

(2016) Jorge Montesinos et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Specialized roles of neurofilament proteins in synapses: Relevance to neuropsychiatric disorders

(2016) Aidong Yuan et al.   BRAIN RESEARCH BULLETIN

MicroRNA-101 Regulates Multiple Developmental Programs to Constrain Excitation in Adult Neural Networks

(2016) Giordano Lippi et al.   NEURON

Microtubule-associated protein 1B (MAP1B)-deficient neurons show structural presynaptic deficiencies in vitro and altered presynaptic physiology

(2016) Felipe J. Bodaleo et al.   Scientific Reports

Dynamics of the mouse brain cortical synaptic proteome during postnatal brain development

(2016) Miguel A. Gonzalez-Lozano et al.   Scientific Reports

Relative Fluid Novelty Differentially Alters the Time Course of Limited-Access Ethanol and Water Intake in Selectively Bred High-Alcohol-Preferring Mice

(2015) David N. Linsenbardt et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

2010 National and State Costs of Excessive Alcohol Consumption

(2015) Jeffrey J. Sacks et al.   AMERICAN JOURNAL OF PREVENTIVE MEDICINE

Neurofilament subunits are integral components of synapses and modulate neurotransmission and behavior in vivo

(2015) A Yuan et al.   MOLECULAR PSYCHIATRY

Cell type– and brain region–resolved mouse brain proteome

(2015) Kirti Sharma et al.   NATURE NEUROSCIENCE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

The effect of prior alcohol consumption on the ataxic response to alcohol in high-alcohol preferring mice

(2014) Brandon M. Fritz et al.   ALCOHOL

cytoHubba: identifying hub objects and sub-networks from complex interactome

(2014) Chia-Hao Chin et al.   BMC Systems Biology

Presynaptic CK2 promotes synapse organization and stability by targeting Ankyrin2

(2014) Victoria Bulat et al.   JOURNAL OF CELL BIOLOGY

An Adaptive Role of TNF  in the Regulation of Striatal Synapses

(2014) G. M. Lewitus et al.   JOURNAL OF NEUROSCIENCE

Isobaric Labeling-Based Relative Quantification in Shotgun Proteomics

(2014) Navin Rauniyar et al.   JOURNAL OF PROTEOME RESEARCH

Isoflurane unveils a critical role of glutamate transporter type 3 in regulating hippocampal GluR1 trafficking and context-related learning and memory in mice

(2014) J. Cao et al.   NEUROSCIENCE

Contribution of Excessive Alcohol Consumption to Deaths and Years of Potential Life Lost in the United States

(2014) Mandy Stahre et al.   Preventing Chronic Disease

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets

(2013) Marcus R. Breese et al.   BIOINFORMATICS

Dorsomedial and dorsolateral striatum exhibit distinct phasic neuronal activity during alcohol self-administration in rats

(2013) Rebecca R. Fanelli et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Mice Anesthesia, Analgesia, and Care, Part I: Anesthetic Considerations in Preclinical Research

(2013) S. Gargiulo et al.   ILAR JOURNAL

Transcriptome Analysis of Mouse Brain Infected with Toxoplasma gondii

(2013) Sachi Tanaka et al.   INFECTION AND IMMUNITY

Impact of the Number of Parents With Alcohol Use Disorder on Alcohol Use Disorder in Offspring

(2013) Gihyun Yoon et al.   JOURNAL OF CLINICAL PSYCHIATRY

Chronic alcohol produces neuroadaptations to prime dorsal striatal learning

(2013) Lauren DePoy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Habitual Alcohol Seeking: Time Course and the Contribution of Subregions of the Dorsal Striatum

(2012) Laura H. Corbit et al.   BIOLOGICAL PSYCHIATRY

A Distal Axonal Cytoskeleton Forms an Intra-Axonal Boundary that Controls Axon Initial Segment Assembly

(2012) Mauricio R. Galiano et al.   CELL

Selection for high alcohol preference drinking in mice results in heightened sensitivity and rapid development of acute functional tolerance to alcohol's ataxic effects

(2012) B. M. Fritz et al.   GENES BRAIN AND BEHAVIOR

Interaction of Voltage-gated Sodium Channel Nav1.6 (SCN8A) with Microtubule-associated Protein Map1b

(2012) Janelle E. O'Brien et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

(2012) Christine Vogel et al.   NATURE REVIEWS GENETICS

Pharmacologically relevant intake during chronic, free-choice drinking rhythms in selectively bred high alcohol-preferring mice

(2011) Liana M. Matson et al.   ADDICTION BIOLOGY

Affect-Related Behaviors in Mice Selectively Bred for High and Low Voluntary Alcohol Consumption

(2011) Adem Can et al.   BEHAVIOR GENETICS

Induction of innate immune genes in brain create the neurobiology of addiction

(2011) F.T. Crews et al.   BRAIN BEHAVIOR AND IMMUNITY

The NumPy Array: A Structure for Efficient Numerical Computation

(2011) Stéfan van der Walt et al.   COMPUTING IN SCIENCE & ENGINEERING

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

Induction of Innate Immune Gene Expression Cascades in Brain Slice Cultures by Ethanol: Key Role of NF-κB and Proinflammatory Cytokines

(2010) Jian Zou et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Fine Mapping Quantitative Trait Loci that Influence Alcohol Preference Behavior in the High and Low Alcohol Preferring (HAP and LAP) Mice

(2010) Paula J. Bice et al.   BEHAVIOR GENETICS

Derivation and Characterization of Replicate High- and Low-Alcohol Preferring Lines of Mice and a High-Drinking Crossed HAP Line

(2010) Brandon Oberlin et al.   BEHAVIOR GENETICS

Long-Lasting Adaptations of the NR2B-Containing NMDA Receptors in the Dorsomedial Striatum Play a Crucial Role in Alcohol Consumption and Relapse

(2010) J. Wang et al.   JOURNAL OF NEUROSCIENCE

Identification and Validation of Novel Spinophilin-associated Proteins in Rodent Striatum Using an Enhancedex VivoShotgun Proteomics Approach

(2010) Anthony J. Baucum et al.   MOLECULAR & CELLULAR PROTEOMICS

MAP1B binds to the NMDA receptor subunit NR3A and affects NR3A protein concentrations

(2010) Maria Eriksson et al.   NEUROSCIENCE LETTERS

High-Alcohol Preferring Mice Are More Impulsive Than Low-Alcohol Preferring Mice as Measured in the Delay Discounting Task

(2009) B. G. Oberlin et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Genomewide SNP Screen to Detect Quantitative Trait Loci for Alcohol Preference in the High Alcohol Preferring and Low Alcohol Preferring Mice

(2008) Paula Bice et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Correlation of mRNA and protein levels: Cell type-specific gene expression of cluster designation antigens in the prostate

(2008) Laura E Pascal et al.   BMC GENOMICS

Drosophila Ankyrin 2 Is Required for Synaptic Stability

(2008) Iris Koch et al.   NEURON