Comparative Analysis of Proteome and Transcriptome Variation in Mouse

Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes

(2010) Amit Zeisel et al.   BMC BIOINFORMATICS

Fine Mapping in 94 Inbred Mouse Strains Using a High-Density Haplotype Resource

(2010) A. Kirby et al.   GENETICS

Expression Quantitative Trait Loci: Replication, Tissue- and Sex-Specificity in Mice

(2010) A. van Nas et al.   GENETICS

A high-resolution association mapping panel for the dissection of complex traits in mice

(2010) B. J. Bennett et al.   GENOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

(2009) Yuliya V. Karpievitch et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

A unifying view of 21st century systems biology

(2009) Marc Vidal   FEBS LETTERS

Copy number variation influences gene expression and metabolic traits in mice

(2009) Luz D. Orozco et al.   HUMAN MOLECULAR GENETICS

A Simple Procedure for Effective Quenching of Trypsin Activity and Prevention of18O-Labeling Back-Exchange

(2009) Brianne O. Petritis et al.   JOURNAL OF PROTEOME RESEARCH

Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry

(2009) Vladislav A. Petyuk et al.   METHODS

System-wide molecular evidence for phenotypic buffering in Arabidopsis

(2009) Jingyuan Fu et al.   NATURE GENETICS

Systems genetics of complex traits in Drosophila melanogaster

(2009) Julien F Ayroles et al.   NATURE GENETICS

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

(2009) S. E. Calvo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies

(2008) Michael C Ryan et al.   BMC BIOINFORMATICS

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Large-Scale Multiplexed Quantitative Discovery Proteomics Enabled by the Use of an18O-Labeled “Universal” Reference Sample

(2008) Wei-Jun Qian et al.   JOURNAL OF PROTEOME RESEARCH

Fine mapping of regulatory loci for mammalian gene expression using radiation hybrids

(2008) Christopher C Park et al.   NATURE GENETICS

High-Resolution Mapping of Gene Expression Using Association in an Outbred Mouse Stock

(2008) Anatole Ghazalpour et al.   PLoS Genetics

Genetical Genomics: Spotlight on QTL Hotspots

(2008) Rainer Breitling et al.   PLoS Genetics