Full-Length Transcriptome Analysis of Four Different Tissues of Cephalotaxus oliveri

Functions of Jasmonic Acid in Plant Regulation and Response to Abiotic Stress

(2020) Jia Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

C2H2 Zinc Finger Proteins: Master Regulators of Abiotic Stress Responses in Plants

(2020) Guoliang Han et al.   Frontiers in Plant Science

Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry Development

(2019) Andrea Minio et al.   G3-Genes Genomes Genetics

In-depth transcriptome characterization uncovers distinct gene family expansions for Cupressus gigantea important to this long-lived species’ adaptability to environmental cues

(2019) Shan-Shan Zhou et al.   BMC GENOMICS

Iso-Seq analysis of the Taxus cuspidata transcriptome reveals the complexity of Taxol biosynthesis

(2019) Xuejun Kuang et al.   BMC PLANT BIOLOGY

MAFFT-DASH: integrated protein sequence and structural alignment

(2019) John Rozewicki et al.   NUCLEIC ACIDS RESEARCH

Circadian Rhythms in Plants

(2019) Nicky Creux et al.   Cold Spring Harbor Perspectives in Biology

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

(2019) Aaron M. Wenger et al.   NATURE BIOTECHNOLOGY

Epigenetic regulation in plant abiotic stress responses

(2019) Ya‐Nan Chang et al.   Journal of Integrative Plant Biology

Integration of Abscisic Acid Signaling with Other Signaling Pathways in Plant Stress Responses and Development

(2019) Manu Kumar et al.   Plants-Basel

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Response of Plant Secondary Metabolites to Environmental Factors

(2018) et al.   MOLECULES

Three new biflavonoids from the branches and leaves of Cephalotaxus oliveri and their antioxidant activity

(2018) Shu Xiao et al.   NATURAL PRODUCT RESEARCH

Genome-wide identification and characterization of novel lncRNAs in Ginkgo biloba

(2018) Li Wang et al.   TREES-STRUCTURE AND FUNCTION

Picea wilsonii transcription factor NAC2 enhanced plant tolerance to abiotic stress and participated in RFCP1-regulated flowering time

(2018) Hehua Zhang et al.   PLANT MOLECULAR BIOLOGY

Transcriptomic Response of Chinese Yew (Taxus chinensis) to Cold Stress

(2017) Delong Meng et al.   Frontiers in Plant Science

Transcriptome Assembly and Systematic Identification of Novel Cytochrome P450s in Taxus chinensis

(2017) Weifang Liao et al.   Frontiers in Plant Science

Tissue-Specific Transcriptome Analysis Reveals Multiple Responses to Salt Stress in Populus euphratica Seedlings

(2017) Le Yu et al.   Genes

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

Jasmonates: signal transduction components and their roles in environmental stress responses

(2016) Jonas Goossens et al.   PLANT MOLECULAR BIOLOGY

Organ-specific metabolic responses to drought in Pinus pinaster Ait.

(2016) Marina de Miguel et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Root transcriptome sequencing and differentially expressed drought-responsive genes in the Platycladus orientalis (L.)

(2016) Sheng Zhang et al.   Tree Genetics & Genomes

Local adaptation to temperature and precipitation in naturally fragmented populations of Cephalotaxus oliveri, an endangered conifer endemic to China

(2016) Ting Wang et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Omics Approaches Toward Defining the Comprehensive Abscisic Acid Signaling Network in Plants

(2015) T. Yoshida et al.   PLANT AND CELL PHYSIOLOGY

The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering

(2015) Fabio Fornara et al.   PLANT JOURNAL

Recent advances and challenges in plant phosphoproteomics

(2015) Cecilia Silva-Sanchez et al.   PROTEOMICS

Comparative analysis of Pinus pinea and Pinus pinaster dehydrins under drought stress

(2015) Pedro Perdiguero et al.   Tree Genetics & Genomes

Salicylic acid and reactive oxygen species interplay in the transcriptional control of defense genes expression

(2015) Ariel Herrera-Vásquez et al.   Frontiers in Plant Science

PacBio Sequencing and Its Applications

(2015) Anthony Rhoads et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

LoRDEC: accurate and efficient long read error correction

(2014) Leena Salmela et al.   BIOINFORMATICS

Phylogeography of Cephalotaxus oliveri (Cephalotaxaceae) in relation to habitat heterogeneity, physical barriers and the uplift of the Yungui Plateau

(2014) C.B. Wang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Role of CBFs as Integrators of Chloroplast Redox, Phytochrome and Plant Hormone Signaling during Cold Acclimation

(2013) Leonid Kurepin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Biochemical analysis of a multifunctional cytochrome P450 (CYP51) enzyme required for synthesis of antimicrobial triterpenes in plants

(2013) K. Geisler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Expression of Selected Ginkgo biloba Heat Shock Protein Genes After Cold Treatment Could Be Induced by Other Abiotic Stress

(2012) Fuliang Cao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Characterization of 15 Polymorphic Microsatellite Loci for Cephalotaxus oliveri (Cephalotaxaceae), a Conifer of Medicinal Importance

(2012) Yingchun Miao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The K-Segments of the Wheat Dehydrin DHN-5 are Essential for the Protection of Lactate Dehydrogenase and β-Glucosidase Activities In Vitro

(2012) Marwa Drira et al.   MOLECULAR BIOTECHNOLOGY

Dehydrins in maritime pine (Pinus pinaster) and their expression related to drought stress response

(2012) Tania Velasco-Conde et al.   Tree Genetics & Genomes

Development of microsatellite loci for Cephalotaxus oliveri (Cephalotaxaceae) and cross-amplification in Cephalotaxus

(2011) Hua-Wei Pan et al.   AMERICAN JOURNAL OF BOTANY

Analysis of calcium signaling pathways in plants

(2011) Oliver Batistič et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

A P450-centric view of plant evolution

(2011) David Nelson et al.   PLANT JOURNAL

Gene Discovery and Tissue-Specific Transcriptome Analysis in Chickpea with Massively Parallel Pyrosequencing and Web Resource Development

(2011) R. Garg et al.   PLANT PHYSIOLOGY

An expanding universe of circadian networks in higher plants

(2010) Jose L. Pruneda-Paz et al.   TRENDS IN PLANT SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

MAPK cascade signalling networks in plant defence

(2009) Andrea Pitzschke et al.   CURRENT OPINION IN PLANT BIOLOGY

Evidence for the adaptive significance of circadian rhythms

(2009) Shai Yerushalmi et al.   ECOLOGY LETTERS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH