Root transcriptome sequencing and differentially expressed drought-responsive genes in the Platycladus orientalis (L.)

De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii

(2015) Xiaowen Ma et al.   BMC GENOMICS

Physiology and proteomics research on the leaves of ancient Platycladus orientalis (L.) during winter

(2015) Sheng Zhang et al.   Journal of Proteomics

The Pepper Lipoxygenase CaLOX1 Plays a Role in Osmotic, Drought and High Salinity Stress Response

(2015) Chae Woo Lim et al.   PLANT AND CELL PHYSIOLOGY

Physiological implications of arginine metabolism in plants

(2015) Gudrun Winter et al.   Frontiers in Plant Science

De novo assembly of the desert tree Haloxylon ammodendron (C. A. Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification

(2015) Yan Long et al.   BMC GENOMICS

De novo transcriptome assembly for rudimentary leaves in Litchi chinesis Sonn. and identification of differentially expressed genes in response to reactive oxygen species

(2014) Xingyu Lu et al.   BMC GENOMICS

De novo transcriptome analysis of petal senescence in Gardenia jasminoides Ellis

(2014) Georgios F Tsanakas et al.   BMC GENOMICS

Transcriptome sequencing and profiling of expressed genes in cambial zone and differentiating xylem of Japanese cedar (Cryptomeria japonica)

(2014) Kentaro Mishima et al.   BMC GENOMICS

Comparative transcriptome profiling of a desert evergreen shrub, Ammopiptanthus mongolicus, in response to drought and cold stresses

(2014) Yaqi Wu et al.   BMC GENOMICS

De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging

(2014) Baiyan Qi et al.   BMC PLANT BIOLOGY

Cloning and characterization of chitinases from interior spruce and lodgepole pine

(2014) N. Kolosova et al.   PHYTOCHEMISTRY

Genome-Wide Analysis of the C3H Zinc Finger Transcription Factor Family and Drought Responses of Members in Aegilops tauschii

(2014) An-Long Jiang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Over-expression of a glutamate dehydrogenase gene, MgGDH, from Magnaporthe grisea confers tolerance to dehydration stress in transgenic rice

(2014) Yanbiao Zhou et al.   PLANTA

Polyamines in response to abiotic stress tolerance through transgenic approaches

(2014) Malabika Roy Pathak et al.   GM Crops & Food-Biotechnology in Agriculture and the Food Chain

Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism

(2013) Xinguo Li et al.   BMC GENOMICS

Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress

(2013) Yuriko Osakabe et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity

(2013) Yuriko Osakabe et al.   NEW PHYTOLOGIST

Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought

(2012) Alok Ranjan et al.   BMC GENOMICS

De novo characterization of the Chinese fir (Cunninghamia lanceolata) transcriptome and analysis of candidate genes involved in cellulose and lignin biosynthesis

(2012) Hua-Hong Huang et al.   BMC GENOMICS

A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice

(2012) An Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Molecular characterization of stress resistance-related chitinase genes of Brassica rapa

(2012) Nasar Uddin Ahmed et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Cloning and characterization of a 9-lipoxygenase gene induced by pathogen attack from Nicotiana benthamiana for biotechnological application

(2011) Fong-Chin Huang et al.   BMC BIOTECHNOLOGY

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

(2011) W Walter Lorenz et al.   BMC GENOMICS

Exogenous ornithine is an effective precursor and the δ-ornithine amino transferase pathway contributes to proline accumulation under high N recycling in salt-stressed cashew leaves

(2011) Iza Marineves Almeida da Rocha et al.   JOURNAL OF PLANT PHYSIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

(2011) Chen Xie et al.   NUCLEIC ACIDS RESEARCH

Genome-wide transcriptomic analysis of cotton under drought stress reveal significant down-regulation of genes and pathways involved in fibre elongation and up-regulation of defense responsive genes

(2011) Kethireddy Venkata Padmalatha et al.   PLANT MOLECULAR BIOLOGY

GsZFP1, a new Cys2/His2-type zinc-finger protein, is a positive regulator of plant tolerance to cold and drought stress

(2011) Xiao Luo et al.   PLANTA

PdERECTA, a leucine-rich repeat receptor-like kinase of poplar, confers enhanced water use efficiency in Arabidopsis

(2011) Hai Tao Xing et al.   PLANTA

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits

(2010) A. Glyn Bengough et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis thaliana plant defensin AtPDF1.1 is involved in the plant response to biotic stress

(2010) Barbara M. A. De Coninck et al.   NEW PHYTOLOGIST

Overexpression of AtABCG36 improves drought and salt stress resistance in Arabidopsis

(2010) Do-Young Kim et al.   PHYSIOLOGIA PLANTARUM

Receptor-like kinase OsSIK1 improves drought and salt stress tolerance in rice (Oryza sativa) plants

(2010) Shou-Qiang Ouyang et al.   PLANT JOURNAL

ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis

(2010) Xiaozhi Ren et al.   PLANT JOURNAL

OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice

(2010) Ju-Seok Seo et al.   PLANT JOURNAL

AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling

(2010) Karl-Josef Dietz et al.   PROTOPLASMA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Genetic and genomic dissection of maize root development and architecture

(2009) Frank Hochholdinger et al.   CURRENT OPINION IN PLANT BIOLOGY

Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco

(2009) G. Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Physiological and Molecular Approaches to Improve Drought Resistance in Soybean

(2009) L. P. Manavalan et al.   PLANT AND CELL PHYSIOLOGY

Identification of drought-responsive genes in roots of upland rice (Oryza sativa L)

(2008) Aline R Rabello et al.   BMC GENOMICS

SuperSAGE: the drought stress-responsive transcriptome of chickpea roots

(2008) Carlos Molina et al.   BMC GENOMICS

Osmyb4 expression improves adaptive responses to drought and cold stress in transgenic apples

(2008) Gemma Pasquali et al.   PLANT CELL REPORTS

Chemical root to shoot signaling under drought

(2008) Daniel P. Schachtman et al.   TRENDS IN PLANT SCIENCE