Incipient resistance to an effective pesticide results from genetic adaptation and the canalization of gene expression

Alternatives to Conventional Antibiotics in the Era of Antimicrobial Resistance

(2019) Chandradhish Ghosh et al.   TRENDS IN MICROBIOLOGY

Allele Frequency Difference AFD–An Intuitive Alternative to FST for Quantifying Genetic Population Differentiation

(2019) Berner   Genes

The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments

(2019) Jean-Simon Brouard et al.   Journal of Animal Science and Biotechnology

Rapid resistance to pesticide control is predicted to evolve in an invasive fish

(2019) Mark R. Christie et al.   Scientific Reports

Influence of body size, metabolic rate and life history stage on the uptake and excretion of the lampricide 3-trifluoromethyl-4-nitrophenol (TFM) by invasive sea lampreys ( Petromyzon marinus )

(2018) Laura R. Tessier et al.   AQUATIC TOXICOLOGY

Rapid evolution meets invasive species control: the potential for pesticide resistance in sea lamprey

(2018) Erin S. Dunlop et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Rapid genetic adaptation to a novel environment despite a genome-wide reduction in genetic diversity

(2018) Janna R. Willoughby et al.   MOLECULAR ECOLOGY

The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution

(2018) Jeramiah J. Smith et al.   NATURE GENETICS

The challenge of herbicide resistance around the world: a current summary

(2018) Mark A Peterson et al.   PEST MANAGEMENT SCIENCE

Wicked evolution: Can we address the sociobiological dilemma of pesticide resistance?

(2018) Fred Gould et al.   SCIENCE

When evolution is the solution to pollution: Key principles, and lessons from rapid repeated adaptation of killifish (Fundulus heteroclitus ) populations

(2017) Andrew Whitehead et al.   Evolutionary Applications

A Conceptual Framework for Integrated Pest Management

(2017) Johan A. Stenberg   TRENDS IN PLANT SCIENCE

Metacoder: An R package for visualization and manipulation of community taxonomic diversity data

(2017) Zachary S. L. Foster et al.   PLoS Computational Biology

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish

(2016) N. M. Reid et al.   SCIENCE

Insecticide Resistance in African Anopheles Mosquitoes: A Worsening Situation that Needs Urgent Action to Maintain Malaria Control

(2016) Hilary Ranson et al.   TRENDS IN PARASITOLOGY

A single generation of domestication heritably alters the expression of hundreds of genes

(2016) Mark R. Christie et al.   Nature Communications

Transcriptome-wide Changes in Coral Gene Expression at Noon and Midnight Under Field Conditions

(2015) Lupita J. Ruiz-Jones et al.   BIOLOGICAL BULLETIN

Dose-Response Analysis Using R

(2015) Christian Ritz et al.   PLoS One

Growth and behavioral effects of the lampricide TFM on non-target fish species

(2014) Christopher R. Middaugh et al.   JOURNAL OF GREAT LAKES RESEARCH

Effect of Calcium on the Oxidative Phosphorylation Cascade in Skeletal Muscle Mitochondria

(2013) Brian Glancy et al.   BIOCHEMISTRY

The effects of the lampricide 3-trifluoromethyl-4-nitrophenol (TFM) on fuel stores and ion balance in a non-target fish, the rainbow trout (Oncorhynchus mykiss)

(2013) Oana Birceanu et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Pesticide tolerance in amphibians: induced tolerance in susceptible populations, constitutive tolerance in tolerant populations

(2013) Jessica Hua et al.   Evolutionary Applications

The genomic signature of dog domestication reveals adaptation to a starch-rich diet

(2013) Erik Axelsson et al.   NATURE

Antibiotic resistance: The last resort

(2013) Maryn McKenna   NATURE

Deciphering the evolution of herbicide resistance in weeds

(2013) Christophe Délye et al.   TRENDS IN GENETICS

The true cost of antimicrobial resistance

(2013) R. Smith et al.   BMJ-British Medical Journal

DIFFERENCES IN THE REGULATION OF GROWTH AND BIOMINERALIZATION GENES REVEALED THROUGH LONG-TERM COMMON-GARDEN ACCLIMATION AND EXPERIMENTAL GENOMICS IN THE PURPLE SEA URCHIN

(2012) Melissa H. Pespeni et al.   EVOLUTION

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The lampricide 3-trifluoromethyl-4-nitrophenol (TFM) uncouples mitochondrial oxidative phosphorylation in both sea lamprey (Petromyzon marinus) and TFM-tolerant rainbow trout (Oncorhynchus mykiss)

(2010) Oana Birceanu et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Origins and Evolution of Antibiotic Resistance

(2010) J. Davies et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Antibiotic resistance and its cost: is it possible to reverse resistance?

(2010) Dan I. Andersson et al.   NATURE REVIEWS MICROBIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Failure of ATP supply to match ATP demand: The mechanism of toxicity of the lampricide, 3-trifluoromethyl-4-nitrophenol (TFM), used to control sea lamprey (Petromyzon marinus) populations in the Great Lakes

(2009) Oana Birceanu et al.   AQUATIC TOXICOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Exact Tests for Hardy–Weinberg Proportions

(2009) William R. Engels   GENETICS