The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
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Title
The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution
Authors
Keywords
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Journal
NATURE GENETICS
Volume 50, Issue 2, Pages 270-277
Publisher
Springer Nature
Online
2018-01-19
DOI
10.1038/s41588-017-0036-1
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Note: Only part of the references are listed.- Characterization of Somatically‐Eliminated Genes During Development of the Sea Lamprey (Petromyzon marinus)
- (2016) Stephanie A. Bryant et al. MOLECULAR BIOLOGY AND EVOLUTION
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
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- (2016) Rafael D Acemel et al. NATURE GENETICS
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- (2016) Ingo Braasch et al. NATURE GENETICS
- A New Chicken Genome Assembly Provides Insight into Avian Genome Structure
- (2016) Wesley C. Warren et al. G3-Genes Genomes Genetics
- Cellular and Molecular Features of Developmentally Programmed Genome Rearrangement in a Vertebrate (Sea Lamprey: Petromyzon marinus)
- (2016) Vladimir A. Timoshevskiy et al. PLoS Genetics
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Lampreys as Diverse Model Organisms in the Genomics Era
- (2015) David W. McCauley et al. BIOSCIENCE
- Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation
- (2015) Yuichiro Hara et al. BMC GENOMICS
- Evolution of two prototypic T cell lineages
- (2015) Sabyasachi Das et al. CELLULAR IMMUNOLOGY
- Emergence of an Ancestral Glycoprotein Hormone in the Pituitary of the Sea Lamprey, a Basal Vertebrate
- (2015) Stacia A. Sower et al. ENDOCRINOLOGY
- The sea lamprey meiotic map improves resolution of ancient vertebrate genome duplications
- (2015) Jeramiah J. Smith et al. GENOME RESEARCH
- Bioinformatic Characterization of Genes and Proteins Involved in Blood Clotting in Lampreys
- (2015) Russell F. Doolittle JOURNAL OF MOLECULAR EVOLUTION
- Evolution of vertebrates as viewed from the crest
- (2015) Stephen A. Green et al. NATURE
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
- (2015) Mihaela Pertea et al. NATURE BIOTECHNOLOGY
- The UCSC Genome Browser database: 2016 update
- (2015) Matthew L. Speir et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2016
- (2015) Andrew Yates et al. NUCLEIC ACIDS RESEARCH
- ALLMAPS: robust scaffold ordering based on multiple maps
- (2015) Haibao Tang et al. GENOME BIOLOGY
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Elephant shark genome provides unique insights into gnathostome evolution
- (2014) Byrappa Venkatesh et al. NATURE
- A Hox regulatory network of hindbrain segmentation is conserved to the base of vertebrates
- (2014) Hugo J. Parker et al. NATURE
- Transcriptional Silencing by Polycomb-Group Proteins
- (2014) U. Grossniklaus et al. Cold Spring Harbor Perspectives in Biology
- Polycomb complexes in stem cells and embryonic development
- (2013) L. Aloia et al. DEVELOPMENT
- The zebrafish reference genome sequence and its relationship to the human genome
- (2013) Kerstin Howe et al. NATURE
- Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
- (2013) Jeramiah J Smith et al. NATURE GENETICS
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations
- (2013) M. S. Campbell et al. PLANT PHYSIOLOGY
- Evidence for at least six Hox clusters in the Japanese lamprey (Lethenteron japonicum)
- (2013) T. K. Mehta et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bivalent Chromatin Marks Developmental Regulatory Genes in the Mouse Embryonic Germline In Vivo
- (2013) Michael Sachs et al. Cell Reports
- Genetic Consequences of Programmed Genome Rearrangement
- (2012) Jeramiah J. Smith et al. CURRENT BIOLOGY
- Decoding Plant and Animal Genome Plasticity from Differential Paleo-Evolutionary Patterns and Processes
- (2012) Florent Murat et al. Genome Biology and Evolution
- Insights into bilaterian evolution from three spiralian genomes
- (2012) Oleg Simakov et al. NATURE
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species
- (2011) J. W. VAN OOIJEN Genetics Research
- A conserved haplotype controls parallel adaptation in geographically distant salmonid populations
- (2011) MICHAEL R. MILLER et al. MOLECULAR ECOLOGY
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments
- (2010) Alexander Lachmann et al. BIOINFORMATICS
- Scaffolding pre-assembled contigs using SSPACE
- (2010) Marten Boetzer et al. BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Fast and SNP-tolerant detection of complex variants and splicing in short reads
- (2010) T. D. Wu et al. BIOINFORMATICS
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- (2010) Jeramiah J. Smith et al. CHROMOSOMA
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- (2010) Jarrod A. Chapman et al. NATURE
- Ongoing and future developments at the Universal Protein Resource
- (2010) NUCLEIC ACIDS RESEARCH
- Complete HOX cluster characterization of the coelacanth provides further evidence for slow evolution of its genome
- (2010) Chris T. Amemiya et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2010) U. Hellsten et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- JBrowse: A next-generation genome browser
- (2009) M. E. Skinner et al. GENOME RESEARCH
- Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes
- (2009) V. Ravi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
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- (2008) S. Kuraku et al. MOLECULAR BIOLOGY AND EVOLUTION
- The amphioxus genome and the evolution of the chordate karyotype
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- (2008) Mansi Srivastava et al. NATURE
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