Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

Shotgun metagenomics offers novel insights into taxonomic compositions, metabolic pathways and antibiotic resistance genes in fish gut microbiome

(2019) Anuj Tyagi et al.   ARCHIVES OF MICROBIOLOGY

Gut Microbiota and Energy Homeostasis in Fish

(2019) Robyn Lisa Butt et al.   Frontiers in Endocrinology

Variability in snake skin microbial assemblages across spatial scales and disease states

(2019) Donald M. Walker et al.   ISME Journal

Core Gut Bacteria Analysis of Healthy Mice

(2019) Jingjing Wang et al.   Frontiers in Microbiology

The gut microbiota influences skeletal muscle mass and function in mice

(2019) Shawon Lahiri et al.   Science Translational Medicine

Analysis of the fecal microbiota of fast- and slow-growing rainbow trout (Oncorhynchus mykiss)

(2019) Pratima Chapagain et al.   BMC GENOMICS

Keto microbiota: A powerful contributor to host disease recovery

(2019) Amanda Cabrera-Mulero et al.   REVIEWS IN ENDOCRINE & METABOLIC DISORDERS

The Short-Chain Fatty Acid Acetate in Body Weight Control and Insulin Sensitivity

(2019) Hernández et al.   Nutrients

The Role of the Gut Microbiome on Skeletal Muscle Mass and Physical Function: 2019 Update

(2019) Michael S. Lustgarten   Frontiers in Physiology

Gut Dysbiosis and Muscle Aging: Searching for Novel Targets against Sarcopenia

(2018) Anna Picca et al.   MEDIATORS OF INFLAMMATION

Relationship between the gut microbiome and brain function

(2018) M Hasan Mohajeri et al.   NUTRITION REVIEWS

The Gut Microbiota of Marine Fish

(2018) Sian Egerton et al.   Frontiers in Microbiology

Gut Microbiota: An Integral Moderator in Health and Disease

(2018) Qingqing Feng et al.   Frontiers in Microbiology

Arachidonic acid: Physiological roles and potential health benefits – A review

(2018) Hatem Tallima et al.   Journal of Advanced Research

Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol

(2018) Lara R. Dugas et al.   BMC PUBLIC HEALTH

Integrated analysis of lncRNA and mRNA expression in rainbow trout families showing variation in muscle growth and fillet quality traits

(2018) Ali Ali et al.   Scientific Reports

Fusobacterium nucleatum — symbiont, opportunist and oncobacterium

(2018) Caitlin A. Brennan et al.   NATURE REVIEWS MICROBIOLOGY

Host genetic selection for cold tolerance shapes microbiome composition and modulates its response to temperature

(2018) Fotini Kokou et al.   eLife

Gut microbiota functions: metabolism of nutrients and other food components

(2017) Ian Rowland et al.   EUROPEAN JOURNAL OF NUTRITION

Feeding the microbiota: transducer of nutrient signals for the host

(2017) Fergus Shanahan et al.   GUT

Gut microbiota: Role in pathogen colonization, immune responses, and inflammatory disease

(2017) Joseph M. Pickard et al.   IMMUNOLOGICAL REVIEWS

A Meta-Transcriptomics Survey Reveals Changes in the Microbiota of the Chinese Mitten Crab Eriocheir sinensis Infected with Hepatopancreatic Necrosis Disease

(2017) Huaishun Shen et al.   Frontiers in Microbiology

Dietary changes in nutritional studies shape the structural and functional composition of the pigs’ fecal microbiome—from days to weeks

(2017) Bruno Tilocca et al.   Microbiome

The malleable gut microbiome of juvenile rainbow trout (Oncorhynchus mykiss): Diet-dependent shifts of bacterial community structures

(2017) Stéphanie Céline Michl et al.   PLoS One

Response to five generations of selection for growth performance traits in rainbow trout ( Oncorhynchus mykiss )

(2016) Timothy D. Leeds et al.   AQUACULTURE

The role of bile acids in metabolic regulation

(2016) Libor Vítek et al.   JOURNAL OF ENDOCRINOLOGY

Metabolism of ketone bodies during exercise and training: physiological basis for exogenous supplementation

(2016) Mark Evans et al.   JOURNAL OF PHYSIOLOGY-LONDON

Skeletal Muscle Regulates Metabolism via Interorgan Crosstalk: Roles in Health and Disease

(2016) Josep M. Argilés et al.   Journal of the American Medical Directors Association

The effect of host genetics on the gut microbiome

(2016) Marc Jan Bonder et al.   NATURE GENETICS

Aquaculture: a rapidly growing and significant source of sustainable food? Status, transitions and potential

(2016) D. C. Little et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Lipid modulation of skeletal muscle mass and function

(2016) Christopher Lipina et al.   Journal of Cachexia Sarcopenia and Muscle

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Bile acid signaling in lipid metabolism: Metabolomic and lipidomic analysis of lipid and bile acid markers linked to anti-obesity and anti-diabetes in mice

(2015) Yunpeng Qi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

The interaction ofSaccharomyces paradoxuswith its natural competitors on oak bark

(2015) Vienna Kowallik et al.   MOLECULAR ECOLOGY

The gut microbiota in human energy homeostasis and obesity

(2015) Michael Rosenbaum et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Production of butyrate from lysine and the Amadori product fructoselysine by a human gut commensal

(2015) Thi Phuong Nam Bui et al.   Nature Communications

Perturbation and restoration of the fathead minnow gut microbiome after low-level triclosan exposure

(2015) Adrienne B Narrowe et al.   Microbiome

The Split-Apply-Combine Strategy for Data Analysis

(2015) Hadley Wickham   Journal of Statistical Software

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

A new model for simulating growth in fish

(2014) Johannes Hamre et al.   PeerJ

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cloacibacterium haliotis sp. nov., isolated from the gut of an abalone, Haliotis discus hannai

(2013) D.-W. Hyun et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide

(2013) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Don't make a mista(g)ke: is tag switching an overlooked source of error in amplicon pyrosequencing studies?

(2012) Tor Carlsen et al.   Fungal Ecology

MmNEU3 sialidase over-expression in C2C12 myoblasts delays differentiation and induces hypertrophic myotube formation

(2012) Nadia Papini et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria

(2012) Paola Navarrete et al.   PLoS One

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Towards the human intestinal microbiota phylogenetic core

(2009) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

Microbiota and SCFA in Lean and Overweight Healthy Subjects

(2009) Andreas Schwiertz et al.   Obesity