Antimicrobial activity screening of rhizosphere soil bacteria from tomato and genome-based analysis of their antimicrobial biosynthetic potential

Overview of the Antimicrobial Compounds Produced by Members of the Bacillus subtilis Group

(2019) Simon Caulier et al.   Frontiers in Microbiology

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline

(2019) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

(2019) Jan P. Meier-Kolthoff et al.   Nature Communications

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis

(2018) Alexander Crits-Christoph et al.   NATURE

BAGEL4: a user-friendly web server to thoroughly mine RiPPs and bacteriocins

(2018) Auke J van Heel et al.   NUCLEIC ACIDS RESEARCH

Evaluation of the Antimicrobial Activity of Endophytic Bacterial Populations From Chinese Traditional Medicinal Plant Licorice and Characterization of the Bioactive Secondary Metabolites Produced by Bacillus atrophaeus Against Verticillium dahliae

(2018) Osama A. A. Mohamad et al.   Frontiers in Microbiology

Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels

(2018) Fabini D. Orata et al.   Frontiers in Microbiology

A new genome-mining tool redefines the lasso peptide biosynthetic landscape

(2017) Jonathan I Tietz et al.   Nature Chemical Biology

Plant growth and resistance promoted by Streptomyces spp. in tomato

(2017) Maila P. Dias et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Large-Scale Bioinformatics Analysis of Bacillus Genomes Uncovers Conserved Roles of Natural Products in Bacterial Physiology

(2017) Kirk J. Grubbs et al.   mSystems

Identification and classification of known and putative antimicrobial compounds produced by a wide variety of Bacillales species

(2016) Xin Zhao et al.   BMC GENOMICS

Insights into the Unique Phosphorylation of the Lasso Peptide Paeninodin

(2016) Shaozhou Zhu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Vinylogous Dehydration by a Polyketide Dehydratase Domain in Curacin Biosynthesis

(2016) William D. Fiers et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Lanthipeptides: chemical synthesis versus in vivo biosynthesis as tools for pharmaceutical production

(2016) Elvis Legala Ongey et al.   Microbial Cell Factories

Structural and mutational analysis of the nonribosomal peptide synthetase heterocyclization domain provides insight into catalysis

(2016) Kristjan Bloudoff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MeDuSa: a multi-draft based scaffolder

(2015) Emanuele Bosi et al.   BIOINFORMATICS

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Bioactive thiazole and benzothiazole derivatives

(2015) Abdul Rouf et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

Class I and Class II Lanthipeptides Produced by Bacillus spp.

(2015) Joana Barbosa et al.   JOURNAL OF NATURAL PRODUCTS

The structural biology of biosynthetic megaenzymes

(2015) Kira J Weissman   Nature Chemical Biology

Nonribosomal Peptide Synthase Gene Clusters for Lipopeptide Biosynthesis in Bacillus subtilis 916 and Their Phenotypic Functions

(2014) Chuping Luo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lassomycin, a Ribosomally Synthesized Cyclic Peptide, Kills Mycobacterium tuberculosis by Targeting the ATP-Dependent Protease ClpC1P1P2

(2014) Ekaterina Gavrish et al.   CHEMISTRY & BIOLOGY

Biological effects of paenilamicin, a secondary metabolite antibiotic produced by the honey bee pathogenic bacteriumPaenibacillus larvae

(2014) Eva Garcia-Gonzalez et al.   MicrobiologyOpen

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Pellasoren: Structure Elucidation, Biosynthesis, and Total Synthesis of a Cytotoxic Secondary Metabolite fromSorangium cellulosum

(2012) Christine Jahns et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Molecular cloning of the gene cluster for lariatin biosynthesis of Rhodococcus jostii K01-B0171

(2012) Junji Inokoshi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Biocontrol of tomato wilt disease byBacillus subtilisisolates from natural environments depends on conserved genes mediating biofilm formation

(2012) Yun Chen et al.   ENVIRONMENTAL MICROBIOLOGY

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

(2012) Joakim Ågren et al.   PLoS One

Evolution of lanthipeptide synthetases

(2012) Q. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant protection and growth stimulation by microorganisms: biotechnological applications of Bacilli in agriculture

(2011) Alejandro Pérez-García et al.   CURRENT OPINION IN BIOTECHNOLOGY

Botrytis cinereaManipulates the Antagonistic Effects between Immune Pathways to Promote Disease Development in Tomato

(2011) Mohamed El Oirdi et al.   PLANT CELL

Molecular Mechanism of Plant Growth Promotion and Induced Systemic Resistance to Tobacco Mosaic Virus by Bacillus spp.

(2010) Shuai Wang   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

A New Type of Pyrrolidine Biosynthesis Is Involved in the Late Steps of Xenocoumacin Production inXenorhabdus nematophila

(2009) Daniela Reimer et al.   CHEMBIOCHEM

More than Anticipated – Production of Antibiotics and Other Secondary Metabolites by Bacillus amyloliquefaciens FZB42

(2008) Xiao-Hua Chen et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Interactions of Bacillus spp. and plants – With special reference to induced systemic resistance (ISR)

(2008) Devendra K. Choudhary et al.   MICROBIOLOGICAL RESEARCH

The rhizosphere: a playground and battlefield for soilborne pathogens and beneficial microorganisms

(2008) Jos M. Raaijmakers et al.   PLANT AND SOIL

Bacillus lipopeptides: versatile weapons for plant disease biocontrol

(2008) Marc Ongena et al.   TRENDS IN MICROBIOLOGY