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Title
From start to end: Phase separation and transcriptional regulation
Authors
Keywords
Phase separation, Heterochromatin formation, Chromatin remodeling, Transcriptional regulation, Post-transcriptional regulation
Journal
Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
Volume 1863, Issue 12, Pages 194641
Publisher
Elsevier BV
Online
2020-10-03
DOI
10.1016/j.bbagrm.2020.194641
References
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Note: Only part of the references are listed.- TDP-43 α-helical structure tunes liquid–liquid phase separation and function
- (2020) Alexander E. Conicella et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Diversity and Emerging Roles of Enhancer RNA in Regulation of Gene Expression and Cell Fate
- (2020) Preston R. Arnold et al. Frontiers in Cell and Developmental Biology
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- (2020) Lukas Frank et al. JOURNAL OF MOLECULAR BIOLOGY
- Phase separation directs ubiquitination of gene-body nucleosomes
- (2020) Laura D. Gallego et al. NATURE
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- (2020) Yi Lu et al. NATURE CELL BIOLOGY
- Hsp27 chaperones FUS phase separation under the modulation of stress-induced phosphorylation
- (2020) Zhenying Liu et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Considerations and Challenges in Studying Liquid-Liquid Phase Separation and Biomolecular Condensates
- (2019) Simon Alberti et al. CELL
- Disordered domains in chromatin-binding proteins
- (2019) Matthew Watson et al. Essays in Biochemistry
- Arabidopsis FLL2 promotes liquid–liquid phase separation of polyadenylation complexes
- (2019) Xiaofeng Fang et al. NATURE
- Phase separation drives X-chromosome inactivation: a hypothesis
- (2019) Andrea Cerase et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Med15: Glutamine-Rich Mediator Subunit with Potential for Plasticity
- (2019) David G. Cooper et al. TRENDS IN BIOCHEMICAL SCIENCES
- Implications of liquid–liquid phase separation in plant chromatin organization and transcriptional control
- (2019) Nan Wang et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- m6A enhances the phase separation potential of mRNA
- (2019) Ryan J. Ries et al. NATURE
- Multivalent m6A motifs promote phase separation of YTHDF proteins
- (2019) Yifei Gao et al. CELL RESEARCH
- Histone Modifications Regulate Chromatin Compartmentalization by Contributing to a Phase Separation Mechanism
- (2019) Liang Wang et al. MOLECULAR CELL
- Enhancer Features that Drive Formation of Transcriptional Condensates
- (2019) Krishna Shrinivas et al. MOLECULAR CELL
- Organization and regulation of gene transcription
- (2019) Patrick Cramer NATURE
- Reading, writing and erasing mRNA methylation
- (2019) Sara Zaccara et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Organization of Chromatin by Intrinsic and Regulated Phase Separation
- (2019) Bryan A. Gibson et al. CELL
- HP1 reshapes nucleosome core to promote phase separation of heterochromatin
- (2019) S. Sanulli et al. NATURE
- Phase separation-deficient TDP43 remains functional in splicing
- (2019) Hermann Broder Schmidt et al. Nature Communications
- What is the switch for coupling transcription and splicing? RNA Polymerase II C‐terminal domain phosphorylation, phase separation and beyond
- (2019) Hiroshi Maita et al. Wiley Interdisciplinary Reviews-RNA
- The emerging role of mediator complex subunit 12 in tumorigenesis and response to chemotherapeutics
- (2019) Shengjie Zhang et al. CANCER
- m 6 A facilitates YTHDF‐independent phase separation
- (2019) Si‐Yu Liu et al. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE
- Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression
- (2019) Danfeng Cai et al. NATURE CELL BIOLOGY
- Stress granule mediated protein aggregation and underlying gene defects in the FTD-ALS spectrum
- (2019) Yalda Baradaran-Heravi et al. NEUROBIOLOGY OF DISEASE
- Formation of Chromatin Subcompartments by Phase Separation
- (2018) Fabian Erdel et al. BIOPHYSICAL JOURNAL
- Phase Separation of FUS Is Suppressed by Its Nuclear Import Receptor and Arginine Methylation
- (2018) Mario Hofweber et al. CELL
- A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins
- (2018) Jie Wang et al. CELL
- Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus
- (2018) Sofia A. Quinodoz et al. CELL
- IDPs in macromolecular complexes: the roles of multivalent interactions in diverse assemblies
- (2018) Ho Yee Joyce Fung et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Super-Enhancer-Driven Long Non-Coding RNA LINC01503, Regulated by TP63, Is Over-Expressed and Oncogenic in Squamous Cell Carcinoma
- (2018) Jian-Jun Xie et al. GASTROENTEROLOGY
- Genomic and Epigenomic Aberrations in Esophageal Squamous Cell Carcinoma and Implications for Patients
- (2018) De-Chen Lin et al. GASTROENTEROLOGY
- Single-molecule imaging reveals dynamic biphasic partition of RNA-binding proteins in stress granules
- (2018) Benedikt Niewidok et al. JOURNAL OF CELL BIOLOGY
- What lava lamps and vinaigrette can teach us about cell biology
- (2018) Elie Dolgin NATURE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II
- (2018) Huasong Lu et al. NATURE
- RNA polymerase II clustering through carboxy-terminal domain phase separation
- (2018) Marc Boehning et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression
- (2018) Yuan Jiang et al. Nature Communications
- Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
- (2018) Ann Boija et al. CELL
- Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome
- (2018) Yongdae Shin et al. CELL
- Phase separation drives heterochromatin domain formation
- (2017) Amy R. Strom et al. NATURE
- RNA phase transitions in repeat expansion disorders
- (2017) Ankur Jain et al. NATURE
- Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
- (2017) Adam G. Larson et al. NATURE
- Programming molecular self-assembly of intrinsically disordered proteins containing sequences of low complexity
- (2017) Joseph R. Simon et al. Nature Chemistry
- Transcription regulation by the Mediator complex
- (2017) Julie Soutourina NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Biomolecular condensates: organizers of cellular biochemistry
- (2017) Salman F. Banani et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Dynamic m6A modification regulates local translation of mRNA in axons
- (2017) Jun Yu et al. NUCLEIC ACIDS RESEARCH
- The interaction of lncRNA EZR-AS1 with SMYD3 maintains overexpression of EZR in ESCC cells
- (2017) Xiao-Dan Zhang et al. NUCLEIC ACIDS RESEARCH
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- (2016) Menglong Zeng et al. CELL
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- (2016) Chi W. Pak et al. MOLECULAR CELL
- Transferable model for chromosome architecture
- (2016) Michele Di Pierro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue
- (2016) Kevin M. Harlen et al. Cell Reports
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- (2015) Avinash Patel et al. CELL
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- (2015) Yuan Lin et al. MOLECULAR CELL
- The Mediator complex: a central integrator of transcription
- (2015) Benjamin L. Allen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
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- (2015) Shana Elbaum-Garfinkle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Liquid-Liquid Phase Separation in Biology
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- (2014) Yi-Bo Gao et al. NATURE GENETICS
- Genomic and molecular characterization of esophageal squamous cell carcinoma
- (2014) De-Chen Lin et al. NATURE GENETICS
- Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers
- (2013) Jakob Lovén et al. CELL
- Dynamic Integration of Splicing within Gene Regulatory Pathways
- (2013) Ulrich Braunschweig et al. CELL
- Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains
- (2013) Ilmin Kwon et al. CELL
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- (2013) Warren A. Whyte et al. CELL
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- The Mediator complex and transcription regulation
- (2013) Zachary C. Poss et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues
- (2013) R. K. Das et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels
- (2012) Masato Kato et al. CELL
- Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons
- (2012) Kate D. Meyer et al. CELL
- The RNA polymerase II CTD coordinates transcription and RNA processing
- (2012) J.-P. Hsin et al. GENES & DEVELOPMENT
- Phase transitions in the assembly of multivalent signalling proteins
- (2012) Pilong Li et al. NATURE
- Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
- (2012) Dan Dominissini et al. NATURE
- The changing faces of HP1: From heterochromatin formation and gene silencing to euchromatic gene expression
- (2011) So Hee Kwon et al. BIOESSAYS
- Chromodomain-Mediated Oligomerization of HP1 Suggests a Nucleosome-Bridging Mechanism for Heterochromatin Assembly
- (2011) Daniele Canzio et al. MOLECULAR CELL
- Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes
- (2011) C. P. Brangwynne et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Biogenesis and function of nuclear bodies
- (2011) Yuntao S. Mao et al. TRENDS IN GENETICS
- Germline P Granules Are Liquid Droplets That Localize by Controlled Dissolution/Condensation
- (2009) C. P. Brangwynne et al. SCIENCE
- TFCat: the curated catalog of mouse and human transcription factors
- (2009) Debra L Fulton et al. GENOME BIOLOGY
- Histone Ubiquitination: Triggering Gene Activity
- (2008) Vikki M. Weake et al. MOLECULAR CELL
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