Quantifying the importance of external and internal sources to the gut microbiota in juvenile and adult shrimp

Identifying Potential Polymicrobial Pathogens: Moving Beyond Differential Abundance to Driver Taxa

(2020) Jiaqi Lu et al.   MICROBIAL ECOLOGY

Microecological Koch’s postulates reveal that intestinal microbiota dysbiosis contributes to shrimp white feces syndrome

(2020) Zhijian Huang et al.   Microbiome

Comparable Ecological Processes Govern the Temporal Succession of Gut Bacteria and Microeukaryotes as Shrimp Aged

(2020) Jinbo Xiong et al.   MICROBIAL ECOLOGY

Spatiotemporal successions of shrimp gut microbial colonization: high consistency despite distinct species pool

(2019) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis of composition, function and cycling processes of microbial community in water, sediment and effluent of Litopenaeus vannamei farming environments under different culture modes

(2019) Mengyu Zhang et al.   AQUACULTURE

Bacterial community compositions of crab intestine, surrounding water, and sediment in two different feeding modes of Eriocheir sinensis

(2019) Yunfei Sun et al.   Aquaculture Reports

Integrating molecular and ecological approaches to identify potential polymicrobial pathogens over a shrimp disease progression

(2018) Wenfang Dai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Progress in the gut microbiota in exploring shrimp disease pathogenesis and incidence

(2018) Jinbo Xiong   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Quantitative prediction of shrimp disease incidence via the profiles of gut eukaryotic microbiota

(2018) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative analysis of the bacterial community compositions of the shrimp intestine, surrounding water and sediment

(2018) D. Hou et al.   JOURNAL OF APPLIED MICROBIOLOGY

Host Age Affects the Development of Southern Catfish Gut Bacterial Community Divergent From That in the Food and Rearing Water

(2018) Zhimin Zhang et al.   Frontiers in Microbiology

The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors

(2018) Zoe A. Pratte et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbiota assemblages of water, sediment, and intestine and their associations with environmental factors and shrimp physiological health

(2018) Fei Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Response of host-bacterial colonization in shrimp to developmental stage, environment and disease

(2018) Jinbo Xiong et al.   MOLECULAR ECOLOGY

A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

(2018) Fernanda Cornejo-Granados et al.   PeerJ

Effects of a Commercial Microbial Agent on the Bacterial Communities in Shrimp Culture System

(2018) Zidan Liu et al.   Frontiers in Microbiology

Microbiota comparison of Pacific white shrimp intestine and sediment at freshwater and marine cultured environment

(2018) Lanfen Fan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Integrating gut microbiota immaturity and disease-discriminatory taxa to diagnose the initiation and severity of shrimp disease

(2017) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial Signatures of “Red-Operculum” Disease in the Gut of Crucian Carp (Carassius auratus)

(2017) Tongtong Li et al.   MICROBIAL ECOLOGY

Fish larval recruitment to reefs is a thyroid hormone-mediated metamorphosis sensitive to the pesticide chlorpyrifos

(2017) Guillaume Holzer et al.   eLife

Composition, diversity and function of intestinal microbiota in pacific white shrimp (Litopenaeus vannamei) at different culture stages

(2017) Shenzheng Zeng et al.   PeerJ

Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions

(2017) Fernanda Cornejo-Granados et al.   Scientific Reports

Advances, challenges, and directions in shrimp disease control: the guidelines from an ecological perspective

(2016) Jinbo Xiong et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Strain and dose infectivity of Vibrio parahaemolyticus : the causative agent of early mortality syndrome in shrimp

(2016) Moonyoung Choi et al.   AQUACULTURE RESEARCH

Environmental filtering decreases with fish development for the assembly of gut microbiota

(2016) Qingyun Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial concentration and diversity in fresh tropical shrimps (Penaeus notialis) and the surrounding brackish waters and sediment

(2016) D. Sylvain Dabadé et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Interaction between gut microbiota and toll-like receptor: from immunity to metabolism

(2016) Jensen H.C. Yiu et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Amphibian gut microbiota shifts differentially in community structure but converges on habitat-specific predicted functions

(2016) Molly C. Bletz et al.   Nature Communications

Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults

(2015) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Early life events influence whole-of-life metabolic health via gut microflora and gut permeability

(2014) Caroline A. Kerr et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Exercise and associated dietary extremes impact on gut microbial diversity

(2014) Siobhan F Clarke et al.   GUT

Ecological theory as a foundation to control pathogenic invasion in aquaculture

(2014) Peter De Schryver et al.   ISME Journal

Amphibian skin may select for rare environmental microbes

(2014) Jenifer B Walke et al.   ISME Journal

Bacterioplankton assemblages as biological indicators of shrimp health status

(2013) Demin Zhang et al.   ECOLOGICAL INDICATORS

The Temporal Scaling of Bacterioplankton Composition: High Turnover and Predictability during Shrimp Cultivation

(2013) Jinbo Xiong et al.   MICROBIAL ECOLOGY

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Innovation cycles, niches and sustainability in the shrimp aquaculture industry in Thailand

(2010) Louis Lebel et al.   ENVIRONMENTAL SCIENCE & POLICY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Aquaculture: global status and trends

(2010) J. Bostock et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Like Will to Like: Abundances of Closely Related Species Can Predict Susceptibility to Intestinal Colonization by Pathogenic and Commensal Bacteria

(2010) Bärbel Stecher et al.   PLoS Pathogens