Bacterial Signatures of “Red-Operculum” Disease in the Gut of Crucian Carp (Carassius auratus)

Response of gut microbiota to salinity change in two euryhaline aquatic animals with reverse salinity preference

(2016) Meiling Zhang et al.   AQUACULTURE

Metagenomic Characterisation of the Viral Community of Lough Neagh, the Largest Freshwater Lake in Ireland

(2016) Timofey Skvortsov et al.   PLoS One

Alterations of the gut microbiome of largemouth bronze gudgeon (Coreius guichenoti) suffering from furunculosis

(2016) Tongtong Li et al.   Scientific Reports

The Microbiota of Freshwater Fish and Freshwater Niches Contain Omega-3 Fatty Acid-Producing Shewanella Species

(2015) Frank E. Dailey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Goldfish Carassius auratus susceptibility to viral hemorrhagic septicemia virus genotype IVb depends on exposure route

(2015) RG Getchell et al.   DISEASES OF AQUATIC ORGANISMS

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti-PD-L1 efficacy

(2015) A. Sivan et al.   SCIENCE

The Evolution of Stomach Acidity and Its Relevance to the Human Microbiome

(2015) DeAnna E. Beasley et al.   PLoS One

Ecosystem stability in space: α, β and γ variability

(2014) Shaopeng Wang et al.   ECOLOGY LETTERS

Diet type dictates the gut microbiota and the immune response against Yersinia ruckeri in rainbow trout (Oncorhynchus mykiss)

(2014) Hans-Christian Ingerslev et al.   FISH & SHELLFISH IMMUNOLOGY

Exercise and associated dietary extremes impact on gut microbial diversity

(2014) Siobhan F Clarke et al.   GUT

Host adaptive immunity alters gut microbiota

(2014) Husen Zhang et al.   ISME Journal

Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

(2014) J. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Pyrosequencing-based characterization of gastrointestinal bacteria of Atlantic salmon (Salmo salarL.) within a commercial mariculture system

(2014) K.Z. Zarkasi et al.   JOURNAL OF APPLIED MICROBIOLOGY

Comparative Analysis of the Intestinal Bacterial Communities in Different Species of Carp by Pyrosequencing

(2014) Tongtong Li et al.   MICROBIAL ECOLOGY

Alterations of the human gut microbiome in liver cirrhosis

(2014) Nan Qin et al.   NATURE

The respiration, excretion and biochemical response of the juvenile common Chinese cuttlefish, Sepiella maindroni at different temperatures

(2013) Fei Yin et al.   AQUACULTURE

Does the gastrointestinal tract serve as the infectious route ofAeromonas hydrophilain crucian carp (Carassius carassius)?

(2013) Xu-Jie Zhang et al.   AQUACULTURE RESEARCH

RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species

(2013) Steve Smith et al.   BMC GENOMICS

Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus)

(2013) Mengxin Xing et al.   FEMS MICROBIOLOGY ECOLOGY

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Metagenomic Identification of Bacterioplankton Taxa and Pathways Involved in Microcystin Degradation in Lake Erie

(2013) Xiaozhen Mou et al.   PLoS One

Global Transcriptional Responses of the Toxic Cyanobacterium, Microcystis aeruginosa, to Nitrogen Stress, Phosphorus Stress, and Growth on Organic Matter

(2013) Matthew J. Harke et al.   PLoS One

Network Analysis Highlights Complex Interactions between Pathogen, Host and Commensal Microbiota

(2013) Sébastien Boutin et al.   PLoS One

Protection of crucian carp (Carassius auratus Gibelio) against septicaemia caused byAeromonas hydrophilausing specific egg yolk immunoglobulins

(2012) Liji Jin et al.   AQUACULTURE RESEARCH

Ingestion of metal-nanoparticle contaminated food disrupts endogenous microbiota in zebrafish (Danio rerio)

(2012) Daniel L. Merrifield et al.   ENVIRONMENTAL POLLUTION

Oral transmission as a route of infection for viral haemorrhagic septicaemia virus in rainbow trout, Oncorhynchus mykiss (Walbaum)

(2012) A A Schönherz et al.   JOURNAL OF FISH DISEASES

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Cyanotoxins: Bioaccumulation and Effects on Aquatic Animals

(2011) Aloysio da S. Ferrão-Filho et al.   Marine Drugs

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

(2011) Hideyuki Tamaki et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)

(2010) Shangong Wu et al.   AQUACULTURE

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Host–microbiota interactions within the fish intestinal ecosystem

(2010) T Pérez et al.   Mucosal Immunology

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Host-microbial symbiosis in the vertebrate gastrointestinal tract and the Lactobacillus reuteri paradigm

(2010) J. Walter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial coldwater disease of fishes caused by Flavobacterium psychrophilum

(2010) Clifford E. Starliper   Journal of Advanced Research

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stable isotope evidence of ontogenetic changes in the diet of gizzard shadDorosoma cepedianum

(2009) L. De Brabandere et al.   JOURNAL OF FISH BIOLOGY

Effects of subchronic nitrite exposure on rainbow trout (Oncorhynchus mykiss)

(2008) H. Kroupova et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Development of a sensitive and quantitative assay for spring viremia of carp virus based on real-time RT-PCR

(2008) Zhiqin Yue et al.   JOURNAL OF VIROLOGICAL METHODS

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

(2008) Harry J. Flint et al.   NATURE REVIEWS MICROBIOLOGY