Multiparametric Profiling of Engineered Nanomaterials: Unmasking the Surface Coating Effect

Next‐Generation Sequencing Reveals Differential Responses to Acute versus Long‐Term Exposures to Graphene Oxide in Human Lung Cells

(2020) Sourav P. Mukherjee et al.   Small

Size-Dependent Pulmonary Impact of Thin Graphene Oxide Sheets in Mice: Toward Safe-by-Design

(2020) Artur Filipe Rodrigues et al.   Advanced Science

INSIdE NANO: a systems biology framework to contextualize the mechanism-of-action of engineered nanomaterials

(2019) Angela Serra et al.   Scientific Reports

FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments

(2019) Giovanni Scala et al.   BMC BIOINFORMATICS

On the issue of transparency and reproducibility in nanomedicine

(2019) Hon S. Leong et al.   Nature Nanotechnology

Surface PEGylation suppresses pulmonary effects of CuO in allergen-induced lung inflammation

(2019) Marit Ilves et al.   Particle and Fibre Toxicology

An integrative computational approach for a prioritization of key transcription regulators associated with nanomaterial-induced toxicity

(2019) Vadim Zhernovkov et al.   TOXICOLOGICAL SCIENCES

The viral protein corona directs viral pathogenesis and amyloid aggregation

(2019) Kariem Ezzat et al.   Nature Communications

Using Large Datasets to Understand Nanotechnology

(2019) Kalina Paunovska et al.   ADVANCED MATERIALS

An in-depth multi-omics analysis in RLE-6TN rat alveolar epithelial cells allows for nanomaterial categorization

(2019) Isabel Karkossa et al.   Particle and Fibre Toxicology

SerpinB2 inhibits migration and promotes a resolution phase signature in large peritoneal macrophages

(2019) Wayne A. Schroder et al.   Scientific Reports

Advanced tools for the safety assessment of nanomaterials

(2018) Bengt Fadeel et al.   Nature Nanotechnology

Multihierarchically Profiling the Biological Effects of Various Metal-Based Nanoparticles in Macrophages under Low Exposure Doses

(2018) Jie Zhang et al.   ACS Sustainable Chemistry & Engineering

Minimum information reporting in bio–nano experimental literature

(2018) Matthew Faria et al.   Nature Nanotechnology

Physicochemical Properties Can Be Key Determinants of Mesoporous Silica Nanoparticle Potency in Vitro

(2018) Dalibor Breznan et al.   ACS Nano

New approach for understanding genome variations in KEGG

(2018) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

The Gene Ontology Resource: 20 years and still GOing strong

(2018)   NUCLEIC ACIDS RESEARCH

Multi-hierarchical profiling the structure-activity relationships of engineered nanomaterials at nano-bio interfaces

(2018) Xiaoming Cai et al.   Nature Communications

Toward a systematic exploration of nano-bio interactions

(2017) Xue Bai et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

Single-cell mass cytometry and transcriptome profiling reveal the impact of graphene on human immune cells

(2017) Marco Orecchioni et al.   Nature Communications

PEGylated graphene oxide elicits strong immunological responses despite surface passivation

(2017) Nana Luo et al.   Nature Communications

Cytokine Profiling of Primary Human Macrophages Exposed to Endotoxin-Free Graphene Oxide: Size-Independent NLRP3 Inflammasome Activation

(2017) Sourav P. Mukherjee et al.   Advanced Healthcare Materials

Bruton’s Tyrosine Kinase: An Emerging Key Player in Innate Immunity

(2017) Alexander N. R. Weber et al.   Frontiers in Immunology

Nanomaterial libraries and model organisms for rapid high-content analysis of nanosafety

(2017) Yiye Li et al.   National Science Review

PEGylation as a strategy for improving nanoparticle-based drug and gene delivery

(2016) Jung Soo Suk et al.   ADVANCED DRUG DELIVERY REVIEWS

Cytotoxic and Proinflammatory Effects of Metal-Based Nanoparticles on THP-1 Monocytes Characterized by Combined Proteomics Approaches

(2016) Nataliya K. Tarasova et al.   JOURNAL OF PROTEOME RESEARCH

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

Detection of Endotoxin Contamination of Graphene Based Materials Using the TNF-α Expression Test and Guidelines for Endotoxin-Free Graphene Oxide Production

(2016) Sourav P. Mukherjee et al.   PLoS One

One low-dose exposure of gold nanoparticles induces long-term changes in human cells

(2016) Priscila Falagan-Lotsch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantum dots induced interferon beta expression via TRIF-dependent signaling pathways by promoting endocytosis of TLR4

(2016) Chia-Chi Ho et al.   TOXICOLOGY

Critical review: impacts of macromolecular coatings on critical physicochemical processes controlling environmental fate of nanomaterials

(2016) Stacey M. Louie et al.   Environmental Science-Nano

High-throughput, quantitative assessment of the effects of low-dose silica nanoparticles on lung cells: grasping complex toxicity with a great depth of field

(2015) Cédric Pisani et al.   BMC GENOMICS

Global transcriptomic analysis of model human cell lines exposed to surface-modified gold nanoparticles: the effect of surface chemistry

(2015) E. M. Grzincic et al.   Nanoscale

Proteomics Analysis Reveals Distinct Corona Composition on Magnetic Nanoparticles with Different Surface Coatings: Implications for Interactions with Primary Human Macrophages

(2015) Carmen Vogt et al.   PLoS One

Comprehensive In Vitro Toxicity Testing of a Panel of Representative Oxide Nanomaterials: First Steps towards an Intelligent Testing Strategy

(2015) Lucian Farcal et al.   PLoS One

Comparative Proteomic Analysis of the Molecular Responses of Mouse Macrophages to Titanium Dioxide and Copper Oxide Nanoparticles Unravels Some Toxic Mechanisms for Copper Oxide Nanoparticles in Macrophages

(2015) Sarah Triboulet et al.   PLoS One

Next-Generation Sequencing Reveals Low-Dose Effects of Cationic Dendrimers in Primary Human Bronchial Epithelial Cells

(2014) Neus Feliu et al.   ACS Nano

Tuning Cell Autophagy by Diversifying Carbon Nanotube Surface Chemistry

(2014) Ling Wu et al.   ACS Nano

Dysregulation of Macrophage Activation Profiles by Engineered Nanoparticles

(2013) Vamsi Kodali et al.   ACS Nano

Nanoparticles Inhibit DNA Replication by Binding to DNA: Modeling and Experimental Validation

(2013) Kungang Li et al.   ACS Nano

Causal analysis approaches in Ingenuity Pathway Analysis

(2013) Andreas Krämer et al.   BIOINFORMATICS

Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

(2013) Edward Y Chen et al.   BMC BIOINFORMATICS

Gene Expression Profiling of Immune-Competent Human Cells Exposed to Engineered Zinc Oxide or Titanium Dioxide Nanoparticles

(2013) Soile Tuomela et al.   PLoS One

Quantum dots induced monocyte chemotactic protein-1 expression via MyD88-dependent Toll-like receptor signaling pathways in macrophages

(2013) Chia-Chi Ho et al.   TOXICOLOGY

Contamination of nanoparticles by endotoxin: evaluation of different test methods

(2012) Stijn Smulders et al.   Particle and Fibre Toxicology

Stability and biocompatibility of a library of polyester dendrimers in comparison to polyamidoamine dendrimers

(2011) Neus Feliu et al.   BIOMATERIALS

Understanding and controlling the interaction of nanomaterials with proteins in a physiological environment

(2011) Carl D. Walkey et al.   CHEMICAL SOCIETY REVIEWS

Size-Dependent Attenuation of TLR9 Signaling by Gold Nanoparticles in Macrophages

(2011) C.-Y. Tsai et al.   JOURNAL OF IMMUNOLOGY

Nanoparticle Size and Surface Chemistry Determine Serum Protein Adsorption and Macrophage Uptake

(2011) Carl D. Walkey et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A Physiological Function of Inflammation-Associated SerpinB2 Is Regulation of Adaptive Immunity

(2010) Wayne A. Schroder et al.   JOURNAL OF IMMUNOLOGY

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Perturbational profiling of nanomaterial biologic activity

(2008) S. Y. Shaw et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA