A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming

Climate warming accelerates temporal scaling of grassland soil microbial biodiversity

(2019) Xue Guo et al.   Nature Ecology & Evolution

Global diversity and biogeography of bacterial communities in wastewater treatment plants

(2019) Linwei Wu et al.   Nature Microbiology

A general framework for quantitatively assessing ecological stochasticity

(2019) Daliang Ning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Oral microbiota of periodontal health and disease and their changes after nonsurgical periodontal therapy

(2018) Casey Chen et al.   ISME Journal

Precipitation affects soil microbial and extracellular enzymatic responses to warming

(2018) Guanlin Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial community assembly differs across minerals in a rhizosphere microcosm

(2018) Thea Whitman et al.   ENVIRONMENTAL MICROBIOLOGY

Climate warming leads to divergent succession of grassland microbial communities

(2018) Xue Guo et al.   Nature Climate Change

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China)

(2017) Qingyun Yan et al.   MOLECULAR ECOLOGY

Microbial change in warming soils

(2017) Daniel B. Metcalfe   SCIENCE

Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass

(2016) Erin E. Nuccio et al.   ECOLOGY

Effects of dispersal and selection on stochastic assembly in microbial communities

(2016) Sarah Evans et al.   ISME Journal

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

(2016) James C. Stegen et al.   Nature Communications

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming

(2016) Kai Xue et al.   Nature Climate Change

ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses

(2016) Jennifer Fouquier et al.   Microbiome

Warming and increased precipitation enhance phenol oxidase activity in soil while warming induces drought stress in vegetation of an Arctic ecosystem

(2015) Juyoung Seo et al.   GEODERMA

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Predicting microbial traits with phylogenies

(2015) Marta Goberna et al.   ISME Journal

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

(2015) Francisco Dini-Andreote et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats

(2015) Jizhong Zhou et al.   mBio

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Community assembly in harsh environments: the prevalence of ecological drift in the heath vegetation of South America

(2015) J. L. A. Silva et al.   Ecosphere

Estimating and mapping ecological processes influencing microbial community assembly

(2015) James C. Stegen et al.   Frontiers in Microbiology

Assessing the relative importance of neutral stochasticity in ecological communities

(2014) Mark Vellend et al.   OIKOS

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes

(2013) Jianjun Wang et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Significance testing in ecological null models

(2012) Joseph A. Veech   Theoretical Ecology

Reproducibility and quantitation of amplicon sequencing-based detection

(2011) Jizhong Zhou et al.   ISME Journal

Effect of warming and drought on grassland microbial communities

(2011) Cody S Sheik et al.   ISME Journal

Stochastic and deterministic processes interact in the assembly of desert microbial communities on a global scale

(2011) Tancredi Caruso et al.   ISME Journal

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

A Multiscalar Global Drought Dataset: The SPEIbase: A New Gridded Product for the Analysis of Drought Variability and Impacts

(2010) Santiago Beguería et al.   BULLETIN OF THE AMERICAN METEOROLOGICAL SOCIETY

Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities

(2010) Paul V. A. Fine et al.   ECOGRAPHY

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Stochastic Community Assembly Causes Higher Biodiversity in More Productive Environments

(2010) J. M. Chase   SCIENCE

Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests

(2009) Steven W. Kembel   ECOLOGY LETTERS