How gut microbiome interactions affect nutritional traits of Drosophila melanogaster

Maternal gut microbiota in pregnancy influences offspring metabolic phenotype in mice

(2020) Ikuo Kimura et al.   SCIENCE

A role for triglyceride lipase brummer in the regulation of sex differences in Drosophila fat storage and breakdown

(2020) Lianna W. Wat et al.   PLOS BIOLOGY

Bacterial interspecies interactions modulate pH-mediated antibiotic tolerance

(2020) Andrés Aranda-Díaz et al.   eLife

The microbial exometabolome: ecological resource and architect of microbial communities

(2020) Angela E. Douglas   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Metabolic Cooperation among Commensal Bacteria Supports Drosophila Juvenile Growth under Nutritional Stress

(2020) Jessika Consuegra et al.   iScience

Asymmetric paralog evolution between the “cryptic” gene Bmp16 and its well-studied sister genes Bmp2 and Bmp4

(2019) Nathalie Feiner et al.   Scientific Reports

Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis

(2019) Simone Herp et al.   Cell Host & Microbe

Understanding Competition and Cooperation within the Mammalian Gut Microbiome

(2019) Katharine Z. Coyte et al.   CURRENT BIOLOGY

Finding Functional Differences Between Species in a Microbial Community: Case Studies in Wine Fermentation and Kefir Culture

(2019) Chrats Melkonian et al.   Frontiers in Microbiology

Simple animal models for microbiome research

(2019) Angela E. Douglas   NATURE REVIEWS MICROBIOLOGY

Learning representations of microbe–metabolite interactions

(2019) James T. Morton et al.   NATURE METHODS

Division of labor in honey bee gut microbiota for plant polysaccharide digestion

(2019) Hao Zheng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The microbiota of Drosophila suzukii influences the larval development of Drosophila melanogaster

(2019) Gabrielle M. Solomon et al.   PeerJ

Response of Wild Spotted Wing Drosophila (Drosophila suzukii) to Microbial Volatiles

(2019) Eduardo Bueno et al.   JOURNAL OF CHEMICAL ECOLOGY

Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies

(2019) Cecilia Noecker et al.   mSystems

Regulatory Pathways Controlling Female Insect Reproduction

(2018) Sourav Roy et al.   Annual Review of Entomology

Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus Symbiosis

(2018) Maria Elena Martino et al.   Cell Host & Microbe

The Drosophila Immune Deficiency Pathway Modulates Enteroendocrine Function and Host Metabolism

(2018) Layla Kamareddine et al.   Cell Metabolism

Microbial community assembly in wild populations of the fruit fly Drosophila melanogaster

(2018) Karen L. Adair et al.   ISME Journal

Drosophilaas a model to study obesity and metabolic disease

(2018) Laura Palanker Musselman et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Physiological responses of insects to microbial fermentation products: Insights from the interactions between Drosophila and acetic acid

(2018) Geonho Kim et al.   JOURNAL OF INSECT PHYSIOLOGY

High‐throughput discovery of functional disordered regions: investigation of transactivation domains

(2018) Charles NJ Ravarani et al.   Molecular Systems Biology

Grape Sour Rot: A Four-Way Interaction Involving the Host, Yeast, Acetic Acid Bacteria, and Insects

(2018) Megan E Hall et al.   PHYTOPATHOLOGY

Semaphorin3A induces nerve regeneration in the adult cornea-a switch from its repulsive role in development

(2018) Min Zhang et al.   PLoS One

Spatiotemporally Heterogeneous Population Dynamics of Gut Bacteria Inferred from Fecal Time Series Data

(2018) Hidetoshi Inamine et al.   mBio

Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction

(2018) Ziad Al Bkhetan et al.   Scientific Reports

A Metagenome-Wide Association Study and Arrayed Mutant Library Confirm Acetobacter Lipopolysaccharide Genes Are Necessary for Association with Drosophila melanogaster

(2018) K. Makay White et al.   G3-Genes Genomes Genetics

Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem

(2018) Stilianos Louca et al.   Microbiome

Bacterial Methionine Metabolism Genes Influence Drosophila melanogaster Starvation Resistance

(2018) Alec M. Judd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Are microbiome studies ready for hypothesis-driven research?

(2018) Anupriya Tripathi et al.   CURRENT OPINION IN MICROBIOLOGY

Metabolic Basis for Mutualism between Gut Bacteria and Its Impact on the Drosophila melanogaster Host

(2018) Andrew J. Sommer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Mouse Microbiome Is Required for Sex-Specific Diurnal Rhythms of Gene Expression and Metabolism

(2018) Benjamin D. Weger et al.   Cell Metabolism

Microbiota-Derived Lactate Activates Production of Reactive Oxygen Species by the Intestinal NADPH Oxidase Nox and Shortens Drosophila Lifespan

(2018) Igor Iatsenko et al.   IMMUNITY

Microbiome interactions shape host fitness

(2018) Alison L. Gould et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts

(2018) David J. Krause et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The gut microbiota at the intersection of diet and human health

(2018) Christopher L. Gentile et al.   SCIENCE

Lactobacillus plantarum favors the early emergence of fit and fertile adult Drosophila upon chronic undernutrition

(2017) Mélisandre A. Téfit et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

lmerTest Package: Tests in Linear Mixed Effects Models

(2017) Alexandra Kuznetsova et al.   Journal of Statistical Software

A genomic investigation of ecological differentiation between free-living and Drosophila -associated bacteria

(2017) Nathan J. Winans et al.   MOLECULAR ECOLOGY

Limb proportions show developmental plasticity in response to embryo movement

(2017) A. S. Pollard et al.   Scientific Reports

A novel mechanism of cone photoreceptor adaptation

(2017) Marcus H. C. Howlett et al.   PLOS BIOLOGY

Metabolite exchange between microbiome members produces compounds that influence Drosophila behavior

(2017) Caleb N Fischer et al.   eLife

Bovine Polymorphonuclear Neutrophils Cast Neutrophil Extracellular Traps against the Abortive Parasite Neospora caninum

(2017) Rodolfo Villagra-Blanco et al.   Frontiers in Immunology

Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow

(2017) Olga Ponomarova et al.   Cell Systems

The interplay between intestinal bacteria and host metabolism in health and disease: lessons fromDrosophila melanogaster

(2016) Adam C. N. Wong et al.   Disease Models & Mechanisms

The evolution of cooperation within the gut microbiota

(2016) Seth Rakoff-Nahoum et al.   NATURE

The microbiome and innate immunity

(2016) Christoph A. Thaiss et al.   NATURE

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

(2016) Stefanía Magnúsdóttir et al.   NATURE BIOTECHNOLOGY

When pathogenic bacteria meet the intestinal microbiota

(2016) Nathalie Rolhion et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rearing the Fruit Fly Drosophila melanogaster Under Axenic and Gnotobiotic Conditions

(2016) Melinda L. Koyle et al.   Jove-Journal of Visualized Experiments

Opposite Effects of mGluR1a and mGluR5 Activation on Nucleus Accumbens Medium Spiny Neuron Dendritic Spine Density

(2016) Kellie S. Gross et al.   PLoS One

The Host as the Driver of the Microbiota in the Gut and External Environment of Drosophila melanogaster

(2015) Adam C.-N. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Consumption of dietary sugar by gut bacteria determinesDrosophilalipid content

(2015) Jia-Hsin Huang et al.   Biology Letters

The multi-tasking gut epithelium of insects

(2015) Jia-Hsin Huang et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster

(2015) Adam J. Dobson et al.   Nature Communications

piecewiseSEM: Piecewise structural equation modelling inr for ecology, evolution, and systematics

(2015) Jonathan S. Lefcheck   Methods in Ecology and Evolution

Structure of mycobacterial maltokinase, the missing link in the essential GlgE-pathway

(2015) Joana Fraga et al.   Scientific Reports

Microbes Promote Amino Acid Harvest to Rescue Undernutrition in Drosophila

(2015) Ryuichi Yamada et al.   Cell Reports

Interactions betweenDrosophilaand its natural yeast symbionts—IsSaccharomyces cerevisiaea good model for studying the fly-yeast relationship?

(2015) Don Hoang et al.   PeerJ

The Key to Acetate: Metabolic Fluxes of Acetic Acid Bacteria under Cocoa Pulp Fermentation-Simulating Conditions

(2014) Philipp Adler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Acetate Switch of an Intestinal Pathogen Disrupts Host Insulin Signaling and Lipid Metabolism

(2014) Saiyu Hang et al.   Cell Host & Microbe

Why, when, and how did yeast evolve alcoholic fermentation?

(2014) Sofia Dashko et al.   FEMS YEAST RESEARCH

Mechanisms of naturally evolved ethanol resistance in Drosophila melanogaster

(2014) J. D. Fry   JOURNAL OF EXPERIMENTAL BIOLOGY

Gut microbiota dictates the metabolic response of Drosophila to diet

(2014) A. C.- N. Wong et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Individual diet has sex-dependent effects on vertebrate gut microbiota

(2014) Daniel I. Bolnick et al.   Nature Communications

In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors

(2014) Peter D. Newell et al.   Frontiers in Microbiology

Tackling Invasive Alien Species in Europe: the top 20 issues

(2014) Joe Caffrey et al.   Management of Biological Invasions

The Genotypic View of Social Interactions in Microbial Communities

(2013) Sara Mitri et al.   Annual Review of Genetics

The Evolution ofDrosophila melanogasteras a Model for Alcohol Research

(2013) Anita V. Devineni et al.   Annual Review of Neuroscience

Noninvasive Analysis of Microbiome Dynamics in the Fruit Fly Drosophila melanogaster

(2013) Christine Fink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Interspecies Interactions Determine the Impact of the Gut Microbiota on Nutrient Allocation in Drosophila melanogaster

(2013) Peter D. Newell et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Core Fluxome and Metafluxome of Lactic Acid Bacteria under Simulated Cocoa Pulp Fermentation Conditions

(2013) Philipp Adler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Host-Intestinal Microbiota Mutualism: “Learning on the Fly”

(2013) Berra Erkosar et al.   Cell Host & Microbe

Not your ordinary yeast: non-Saccharomycesyeasts in wine production uncovered

(2013) Neil P. Jolly et al.   FEMS YEAST RESEARCH

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

A targeted metabolomic protocol for short-chain fatty acids and branched-chain amino acids

(2013) Xiaojiao Zheng et al.   Metabolomics

A holidic medium for Drosophila melanogaster

(2013) Matthew D W Piper et al.   NATURE METHODS

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

Quantifying Variation in the Ability of Yeasts to Attract Drosophila melanogaster

(2013) Loida Palanca et al.   PLoS One

Can Yeast (S. cerevisiae) Metabolic Volatiles Provide Polymorphic Signaling?

(2013) J. Roman Arguello et al.   PLoS One

Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules

(2013) R. Levy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity

(2013) J. G. M. Markle et al.   SCIENCE

Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in the Same Hosts

(2012) James Angus Chandler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New Insights into the Ecological Interaction Between Grape Berry Microorganisms and Drosophila Flies During the Development of Sour Rot

(2012) André Barata et al.   MICROBIAL ECOLOGY

Small molecule-induced cytosolic activation of protein kinase Akt rescues ischemia-elicited neuronal death

(2012) H. Jo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Ecological Physiology of Diet and Digestive Systems

(2011) William H. Karasov et al.   Annual Review of Physiology

Lactobacillus plantarum Promotes Drosophila Systemic Growth by Modulating Hormonal Signals through TOR-Dependent Nutrient Sensing

(2011) Gilles Storelli et al.   Cell Metabolism

Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster

(2011) Chun Nin Adam Wong et al.   ENVIRONMENTAL MICROBIOLOGY

Analytical and Sensorial Characterization of the Aroma of Wines Produced with Sour Rotten Grapes Using GC-O and GC-MS: Identification of Key Aroma Compounds

(2011) André Barata et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Evolution of starvation resistance in Drosophila melanogaster: measurement of direct and correlated responses to artificial selection

(2011) T. E. SCHWASINGER-SCHMIDT et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Drosophila Microbiome Modulates Host Developmental and Metabolic Homeostasis via Insulin Signaling

(2011) S. C. Shin et al.   SCIENCE

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Microbe Model System

(2011) James Angus Chandler et al.   PLoS Genetics

Intracellular transactivation of HIV can account for the decelerating decay of virus load during drug therapy

(2010) Christian L Althaus et al.   Molecular Systems Biology

Saprophagous insect larvae,Drosophila melanogaster, profit from increased species richness in beneficial microbes

(2009) M. Rohlfs et al.   JOURNAL OF APPLIED ENTOMOLOGY

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla

(2009) M. A. Mahowald et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

(2008) Zhiyong Xi et al.   BMC GENOMICS

Acetobacter fabarum sp. nov., an acetic acid bacterium from a Ghanaian cocoa bean heap fermentation

(2008) I. Cleenwerck et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY