Host specificity of microbiome assembly and its fitness effects in phytoplankton

Microbiomes Reduce Their Host’s Sensitivity to Interspecific Interactions

(2020) Sara L. Jackrel et al.   mBio

Niche-based assembly of bacterial consortia on the diatom Thalassiosira rotula is stable and reproducible

(2020) Julian Mönnich et al.   ISME Journal

Algae−bacteria interactions that balance the planktonic microbiome

(2019) Emilio Cirri et al.   NEW PHYTOLOGIST

Soil microbiomes underlie population persistence of an endangered plant species

(2019) Aaron S. David et al.   AMERICAN NATURALIST

Genome Evolution and Host Microbiome Shifts Correspond with Intraspecific Niche Divergence within Harmful Algal Bloom‐Forming Microcystis aeruginosa

(2019) Sara L. Jackrel et al.   MOLECULAR ECOLOGY

Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades

(2019) Nicholas D. Youngblut et al.   Nature Communications

Vertical transmission of sponge microbiota is inconsistent and unfaithful

(2019) Johannes R. Björk et al.   Nature Ecology & Evolution

Microbiomes as sources of emergent host phenotypes

(2019) J. B. Lynch et al.   SCIENCE

Successive passaging of a plant-associated microbiome reveals robust habitat and host genotype-dependent selection

(2019) Norma M. Morella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial mitigation-exacerbation continuum: a novel framework for microbiome effects on hosts in the face of stress

(2018) Aaron S. David et al.   ECOLOGY

Uncovering the drivers of host-associated microbiota with joint species distribution modelling

(2018) Johannes R. Björk et al.   MOLECULAR ECOLOGY

Large-scale replicated field study of maize rhizosphere identifies heritable microbes

(2018) William A. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Communities of Diatoms Display Strong Conservation Across Strains and Time

(2018) Gregory Behringer et al.   Frontiers in Microbiology

Soil microbial communities alter conspecific and congeneric competition consistent with patterns of field coexistence in three Trifolium congeners

(2018) Andrew Siefert et al.   JOURNAL OF ECOLOGY

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Mutualists Stabilize the Coexistence of Congeneric Legumes

(2018) Andrew Siefert et al.   AMERICAN NATURALIST

Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans -C and Polynucleobacter -B clusters of Betaproteobacteria

(2017) Karel Horňák et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

(2017) Ines Krohn-Molt et al.   Frontiers in Microbiology

Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships

(2017) Justin R. Seymour et al.   Nature Microbiology

Lake Bacterial Assemblage Composition Is Sensitive to Biological Disturbance Caused by an Invasive Filter Feeder

(2017) Vincent J. Denef et al.   mSphere

Developmental and Ecological Benefits of the Maternally Transmitted Microbiota in a Dung Beetle

(2016) Daniel B. Schwab et al.   AMERICAN NATURALIST

Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves

(2016) Kathleen Sprouffske et al.   BMC BIOINFORMATICS

Phylogenetic conservation of freshwater lake habitat preference varies between abundant bacterioplankton phyla

(2016) Marian L. Schmidt et al.   ENVIRONMENTAL MICROBIOLOGY

Efficacy of a probiotic bacterium to treat bats affected by the disease white-nose syndrome

(2016) Tina L. Cheng et al.   JOURNAL OF APPLIED ECOLOGY

Climate-smart soils

(2016) Keith Paustian et al.   NATURE

Chemotaxis toward phytoplankton drives organic matter partitioning among marine bacteria

(2016) Steven Smriga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity

(2016) Jordan G. Kueneman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Cospeciation of gut microbiota with hominids

(2016) A. H. Moeller et al.   SCIENCE

The Host as the Driver of the Microbiota in the Gut and External Environment of Drosophila melanogaster

(2015) Adam C.-N. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Control of Brain Development, Function, and Behavior by the Microbiome

(2015) Timothy R. Sampson et al.   Cell Host & Microbe

Host–microbe interactions as a driver of acclimation to salinity gradients in brown algal cultures

(2015) Simon M Dittami et al.   ISME Journal

Phycosphere bacterial diversity in green algae reveals an apparent similarity across habitats

(2015) Rishiram Ramanan et al.   Algal Research-Biomass Biofuels and Bioproducts

Comparative Gut Microbiota of 59 Neotropical Bird Species

(2015) Sarah M. Hird et al.   Frontiers in Microbiology

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome

(2014) Weibing Shi et al.   GENOME RESEARCH

Host-specificity among abundant and rare taxa in the sponge microbiome

(2014) Julie Reveillaud et al.   ISME Journal

A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring

(2014) Karel SŠimek et al.   LIMNOLOGY AND OCEANOGRAPHY

Comparative Analyses of Three Chlorella Species in Response to Light and Sugar Reveal Distinctive Lipid Accumulation Patterns in the Microalga C. sorokiniana

(2014) Julian N. Rosenberg et al.   PLoS One

Relationships between phyllosphere bacterial communities and plant functional traits in a neotropical forest

(2014) S. W. Kembel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae

(2014) M. A. Alexandrou et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Building the crops of tomorrow: advantages of symbiont-based approaches to improving abiotic stress tolerance

(2014) Devin Coleman-Derr et al.   Frontiers in Microbiology

Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater)

(2014) Sarah M. Hird et al.   PeerJ

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Host-specific adaptation governs the interaction of the marine diatom, Pseudo-nitzschia and their microbiota

(2013) Marilou P Sison-Mangus et al.   ISME Journal

Novel approach for the development of axenic microalgal cultures from environmental samples

(2013) Dae-Hyun Cho et al.   JOURNAL OF PHYCOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice

(2013) V. K. Ridaura et al.   SCIENCE

The Gut Microbiome Modulates Colon Tumorigenesis

(2013) J. P. Zackular et al.   mBio

Bacterial community composition associated with freshwater algae: species specificity vs. dependency on environmental conditions and source community

(2012) Falk Eigemann et al.   FEMS MICROBIOLOGY ECOLOGY

Ecology and Physics of Bacterial Chemotaxis in the Ocean

(2012) Roman Stocker et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Interactions between Diatoms and Bacteria

(2012) S. A. Amin et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Rapid responses of soil microorganisms improve plant fitness in novel environments

(2012) J. A. Lau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alga-Derived Substrates Select for Distinct Betaproteobacterial Lineages and Contribute to Niche Separation in Limnohabitans Strains

(2011) Karel Šimek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

(2011) Danilo Pérez-Pantoja et al.   ENVIRONMENTAL MICROBIOLOGY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis

(2011) Mohammad R. Seyedsayamdost et al.   Nature Chemistry

The under-recognized dominance of Verrucomicrobia in soil bacterial communities

(2011) Gaddy T. Bergmann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Evolutionary Relationships of Wild Hominids Recapitulated by Gut Microbial Communities

(2010) Howard Ochman et al.   PLOS BIOLOGY

Broad Habitat Range of the Phylogenetically Narrow R-BT065 Cluster, Representing a Core Group of the Betaproteobacterial Genus Limnohabitans

(2009) K. Simek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir

(2008) K Simek et al.   AQUATIC MICROBIAL ECOLOGY