Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae

Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system

(2014) Todd H Oakley et al.   BMC BIOINFORMATICS

Phylogenetic trees do not reliably predict feature diversity

(2014) Steven Kelly et al.   DIVERSITY AND DISTRIBUTIONS

Phylogenetic relatedness and the determinants of competitive outcomes

(2014) Oscar Godoy et al.   ECOLOGY LETTERS

The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment

(2014) Patrick A. Venail et al.   JOURNAL OF ECOLOGY

Increased competition does not lead to increased phylogenetic overdispersion in a native grassland

(2013) Jonathan A. Bennett et al.   ECOLOGY LETTERS

Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae

(2013) Anita Narwani et al.   ECOLOGY LETTERS

EDITOR'S CHOICE: Application of genetic diversity-ecosystem function research to ecological restoration

(2013) Karin M. Kettenring et al.   JOURNAL OF APPLIED ECOLOGY

Antagonistic interactions peak at intermediate genetic distance in clinical and laboratory strains of Pseudomonas aeruginosa

(2012) Sijmen E Schoustra et al.   BMC MICROBIOLOGY

The functional genomics of an eco-evolutionary feedback loop: linking gene expression, trait evolution, and community dynamics

(2012) Lutz Becks et al.   ECOLOGY LETTERS

Competitive interactions between forest trees are driven by species' trait hierarchy, not phylogenetic or functional similarity: implications for forest community assembly

(2012) Georges Kunstler et al.   ECOLOGY LETTERS

Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny

(2012) Todd H. Oakley et al.   MOLECULAR BIOLOGY AND EVOLUTION

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

(2012) Z. Xi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Competitive Interactions and Invasiveness: Searching for the Effects of Phylogenetic Relatedness and Origin on Competition Intensity

(2011) Petr Dostál   AMERICAN NATURALIST

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

(2011) Yi Zheng et al.   BMC BIOINFORMATICS

Phylogenomic reconstruction of lactic acid bacteria: an update

(2011) Zhi-Gang Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic limiting similarity and competitive exclusion

(2011) Cyrille Violle et al.   ECOLOGY LETTERS

Phylogenomic analyses and improved resolution of Cetartiodactyla

(2011) Xuming Zhou et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Phylogenetic relatedness predicts priority effects in nectar yeast communities

(2011) K. G. Peay et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

An Experimental Test of Darwin’s Naturalization Hypothesis

(2010) Lin Jiang et al.   AMERICAN NATURALIST

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships

(2010) K. S. Pick et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

(2010) Jerome C. Regier et al.   NATURE

Phenotypic plasticity facilitates recurrent rapid adaptation to introduced predators

(2010) A. G. Scoville et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HaMStR: Profile hidden markov model based search for orthologs in ESTs

(2009) Ingo Ebersberger et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenomics Revives Traditional Views on Deep Animal Relationships

(2009) Hervé Philippe et al.   CURRENT BIOLOGY

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS

Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history

(2009) Marc W. Cadotte et al.   ECOLOGY LETTERS

Rapid contemporary evolution and clonal food web dynamics

(2009) L. E. Jones et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenetic structure of angiosperm communities during tropical forest succession

(2009) S. G. Letcher   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Temperature-related phenotypic plasticity in the green microalga Micrasterias rotata

(2008) J Neustupa et al.   AQUATIC MICROBIAL ECOLOGY

Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species

(2008) Jonathan B. Losos   ECOLOGY LETTERS

Broad phylogenomic sampling improves resolution of the animal tree of life

(2008) Casey W. Dunn et al.   NATURE

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A common tendency for phylogenetic overdispersion in mammalian assemblages

(2008) N. Cooper et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Does phylogenetic relatedness influence the strength of competition among vascular plants?

(2007) James F. Cahill et al.   PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS