Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics
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Title
Databases and Bioinformatic Tools for Glycobiology and Glycoproteomics
Authors
Keywords
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Journal
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
Volume 21, Issue 18, Pages 6727
Publisher
MDPI AG
Online
2020-09-14
DOI
10.3390/ijms21186727
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Note: Only part of the references are listed.- Development of a Computational Tool for Automated Interpretation of Intact O-Glycopeptide Tandem Mass Spectra from Single Proteins
- (2020) Jiangming Huang et al. ANALYTICAL CHEMISTRY
- GlyGen data model and processing workflow
- (2020) Robel Kahsay et al. BIOINFORMATICS
- Recent advances in software tools for more generic and precise intact glycopeptide analysis
- (2020) Weiqian Cao et al. MOLECULAR & CELLULAR PROTEOMICS
- The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences
- (2020) Issaku Yamada et al. NATURE METHODS
- GLAD: GLycan Array Dashboard, a visual analytics tool for glycan microarrays
- (2019) Akul Y Mehta et al. BIOINFORMATICS
- A New Searching Strategy for the Identification of O-Linked Glycopeptides
- (2019) Jiawei Mao et al. ANALYTICAL CHEMISTRY
- Exploitation of glycosylation in enveloped virus pathobiology
- (2019) Yasunori Watanabe et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Glycosylation in the Era of Cancer-Targeted Therapy: Where Are We Heading?
- (2019) Stefan Mereiter et al. CANCER CELL
- Towards a standardized bioinformatics infrastructure for N- and O-glycomics
- (2019) Miguel A. Rojas-Macias et al. Nature Communications
- Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries
- (2019) Zilu Ye et al. NATURE METHODS
- N-GlycositeAtlas: a database resource for mass spectrometry-based human N-linked glycoprotein and glycosylation site mapping
- (2019) Shisheng Sun et al. Clinical Proteomics
- Mass spectrometry-based qualitative and quantitative N-glycomics: An update of 2017–2018
- (2019) Kaijie Xiao et al. ANALYTICA CHIMICA ACTA
- GlyMDB: Glycan Microarray Database and analysis toolset
- (2019) Yiwei Cao et al. BIOINFORMATICS
- Glycomic Signatures of Plasma IgG Improve Preoperative Prediction of the Invasiveness of Small Lung Nodules
- (2019) Xia Zou et al. MOLECULES
- Recent advances in glycoinformatic platforms for glycomics and glycoproteomics
- (2019) Jodie L Abrahams et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Glycoinformatics: bridging isolated islands in the sea of data
- (2018) Ksenia S Egorova et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Application of network smoothing to glycan LC-MS profiling
- (2018) Joshua Klein et al. BIOINFORMATICS
- GlycoStore: a database of retention properties for glycan analysis
- (2018) Sophie Zhao et al. BIOINFORMATICS
- MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns
- (2018) Masae Hosoda et al. CARBOHYDRATE RESEARCH
- Engineered Sialylation of Pathogenic Antibodies In Vivo Attenuates Autoimmune Disease
- (2018) Jose D. Pagan et al. CELL
- Glycomics@ExPASy: Bridging the gap
- (2018) Julien Mariethoz et al. MOLECULAR & CELLULAR PROTEOMICS
- Comprehensive Glycoproteomic Analysis of Chinese Hamster Ovary Cells
- (2018) Ganglong Yang et al. ANALYTICAL CHEMISTRY
- GlyConnect: Glycoproteomics Goes Visual, Interactive, and Analytical
- (2018) Davide Alocci et al. JOURNAL OF PROTEOME RESEARCH
- Mapping the O‐glycoproteome using site‐specific extraction of O‐linked glycopeptides (EXoO)
- (2018) Weiming Yang et al. Molecular Systems Biology
- Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
- (2018) Michael Böhm et al. NUCLEIC ACIDS RESEARCH
- MatrixDB: integration of new data with a focus on glycosaminoglycan interactions
- (2018) Olivier Clerc et al. NUCLEIC ACIDS RESEARCH
- GlyTouCan: an accessible glycan structure repository
- (2017) Michael Tiemeyer et al. GLYCOBIOLOGY
- Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes
- (2017) GLYCOBIOLOGY
- An Improved Approach for N-linked Glycan Structure Identification from HCD MS/MS Spectra
- (2017) Weiping Sun et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification
- (2017) Ming-Qi Liu et al. Nature Communications
- UniCarbKB: New database features for integrating glycan structure abundance, compositional glycoproteomics data, and disease associations
- (2016) Matthew P. Campbell et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database
- (2016) Yukie Akune et al. CARBOHYDRATE RESEARCH
- Quantitative profiling of glycans and glycopeptides: an informatics’ perspective
- (2016) Ian Walsh et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- CSDB_GT: a new curated database on glycosyltransferases
- (2016) Ksenia S Egorova et al. GLYCOBIOLOGY
- Serum WFA+-M2BP levels for evaluation of early stages of liver fibrosis in patients with chronic hepatitis B virus infection
- (2016) Xia Zou et al. LIVER INTERNATIONAL
- pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3
- (2016) Wen-Feng Zeng et al. Scientific Reports
- MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach
- (2015) Ke-Shiuan Lynn et al. ANALYTICAL CHEMISTRY
- GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides
- (2015) Shadi Toghi Eshghi et al. ANALYTICAL CHEMISTRY
- Tissue-Specific Glycosylation at the Glycopeptide Level
- (2015) Katalin F. Medzihradszky et al. MOLECULAR & CELLULAR PROTEOMICS
- The Lectin Frontier Database (LfDB), and Data Generation Based on Frontal Affinity Chromatography
- (2015) Jun Hirabayashi et al. MOLECULES
- Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides
- (2015) Shisheng Sun et al. NATURE BIOTECHNOLOGY
- GlyTouCan 1.0 – The international glycan structure repository
- (2015) Kiyoko Aoki-Kinoshita et al. NUCLEIC ACIDS RESEARCH
- SugarBindDB, a resource of glycan-mediated host–pathogen interactions
- (2015) Julien Mariethoz et al. NUCLEIC ACIDS RESEARCH
- Carbohydrate structure database merged from bacterial, archaeal, plant and fungal parts
- (2015) Philip V. Toukach et al. NUCLEIC ACIDS RESEARCH
- Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation
- (2014) Li Cao et al. ANALYTICAL BIOCHEMISTRY
- Novel LC-MS2 Product Dependent Parallel Data Acquisition Function and Data Analysis Workflow for Sequencing and Identification of Intact Glycopeptides
- (2014) Sz-Wei Wu et al. ANALYTICAL CHEMISTRY
- GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination
- (2014) L. Gotz et al. BIOINFORMATICS
- A glycogene mutation map for discovery of diseases of glycosylation
- (2014) Lars Hansen et al. GLYCOBIOLOGY
- GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry
- (2014) Lin He et al. JOURNAL OF PROTEOME RESEARCH
- Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method
- (2014) Kai Cheng et al. Journal of Proteomics
- MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities
- (2014) G. Launay et al. NUCLEIC ACIDS RESEARCH
- Emerging Principles for the Therapeutic Exploitation of Glycosylation
- (2014) Martin Dalziel et al. SCIENCE
- Automated Assignments of N- and O-Site Specific Glycosylation with Extensive Glycan Heterogeneity of Glycoprotein Mixtures
- (2013) John S. Strum et al. ANALYTICAL CHEMISTRY
- Computational Framework for Identification of Intact Glycopeptides in Complex Samples
- (2013) Anoop Mayampurath et al. ANALYTICAL CHEMISTRY
- Validation of the curation pipeline of UniCarb-DB: Building a global glycan reference MS/MS repository
- (2013) Matthew P. Campbell et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology
- (2013) Catharina Steentoft et al. EMBO JOURNAL
- Glycoproteomic Discovery of Serological Biomarker Candidates for HCV/HBV Infection-Associated Liver Fibrosis and Hepatocellular Carcinoma
- (2013) Hiroyuki Kaji et al. JOURNAL OF PROTEOME RESEARCH
- Exploring Site-Specific N-Glycosylation Microheterogeneity of Haptoglobin Using Glycopeptide CID Tandem Mass Spectra and Glycan Database Search
- (2013) Kevin Brown Chandler et al. JOURNAL OF PROTEOME RESEARCH
- Glycoproteomics-based cancer marker discovery adopting dual enrichment with Wisteria floribunda agglutinin for high specific glyco-diagnosis of cholangiocarcinoma
- (2013) Atsushi Matsuda et al. Journal of Proteomics
- Sweet-Heart — An integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides
- (2013) Sz-Wei Wu et al. Journal of Proteomics
- UniCarbKB: building a knowledge platform for glycoproteomics
- (2013) Matthew P. Campbell et al. NUCLEIC ACIDS RESEARCH
- A serum “sweet-doughnut” protein facilitates fibrosis evaluation and therapy assessment in patients with viral hepatitis
- (2013) Atsushi Kuno et al. Scientific Reports
- The GlycanBuilder and GlycoWorkbench glycoinformatics tools: updates and new developments
- (2012) David Damerell et al. BIOLOGICAL CHEMISTRY
- Large-scale Identification of N-Glycosylated Proteins of Mouse Tissues and Construction of a Glycoprotein Database, GlycoProtDB
- (2012) Hiroyuki Kaji et al. JOURNAL OF PROTEOME RESEARCH
- Semi-Automated Identification of N-Glycopeptides by Hydrophilic Interaction Chromatography, nano-Reverse-Phase LC–MS/MS, and Glycan Database Search
- (2012) Petr Pompach et al. JOURNAL OF PROTEOME RESEARCH
- GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data
- (2012) Evan Maxwell et al. PLoS One
- Large-scale identification of target proteins of a glycosyltransferase isozyme by Lectin-IGOT-LC/MS, an LC/MS-based glycoproteomic approach
- (2012) Daisuke Sugahara et al. Scientific Reports
- Control of mucin-type O-glycosylation: A classification of the polypeptide GalNAc-transferase gene family
- (2011) E. P. Bennett et al. GLYCOBIOLOGY
- UniCarbKB: Putting the pieces together for glycomics research
- (2011) Matthew P. Campbell et al. PROTEOMICS
- Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity
- (2011) Anoop M. Mayampurath et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- EUROCarbDB: An open-access platform for glycoinformatics
- (2010) C.-W. von der Lieth et al. GLYCOBIOLOGY
- GlycomeDB--a unified database for carbohydrate structures
- (2010) R. Ranzinger et al. NUCLEIC ACIDS RESEARCH
- MatrixDB, the extracellular matrix interaction database
- (2010) E. Chautard et al. NUCLEIC ACIDS RESEARCH
- MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions
- (2009) Emilie Chautard et al. BIOINFORMATICS
- A strategy for discovery of cancer glyco-biomarkers in serum using newly developed technologies for glycoproteomics
- (2009) Hisashi Narimatsu et al. FEBS Journal
- GlycomeDB – integration of open-access carbohydrate structure databases
- (2008) René Ranzinger et al. BMC BIOINFORMATICS
- PredGPI: a GPI-anchor predictor
- (2008) Andrea Pierleoni et al. BMC BIOINFORMATICS
- The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
- (2008) B. L. Cantarel et al. NUCLEIC ACIDS RESEARCH
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