pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3

Novel LC-MS2 Product Dependent Parallel Data Acquisition Function and Data Analysis Workflow for Sequencing and Identification of Intact Glycopeptides

(2014) Sz-Wei Wu et al.   ANALYTICAL CHEMISTRY

Strategy Integrating Stepped Fragmentation and Glycan Diagnostic Ion-Based Spectrum Refinement for the Identification of Core Fucosylated Glycoproteome Using Mass Spectrometry

(2014) Qichen Cao et al.   ANALYTICAL CHEMISTRY

Efficient and Accurate Glycopeptide Identification Pipeline for High-Throughput Site-Specific N-Glycosylation Analysis

(2014) Mingqi Liu et al.   JOURNAL OF PROTEOME RESEARCH

GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry

(2014) Lin He et al.   JOURNAL OF PROTEOME RESEARCH

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method

(2014) Kai Cheng et al.   Journal of Proteomics

Fragmentation Characteristics of Deprotonated N-linked Glycopeptides: Influences of Amino Acid Composition and Sequence

(2014) Takashi Nishikaze et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Automated Assignments of N- and O-Site Specific Glycosylation with Extensive Glycan Heterogeneity of Glycoprotein Mixtures

(2013) John S. Strum et al.   ANALYTICAL CHEMISTRY

GlycoPep Detector: A Tool for Assigning Mass Spectrometry Data of N-Linked Glycopeptides on the Basis of Their Electron Transfer Dissociation Spectra

(2013) Zhikai Zhu et al.   ANALYTICAL CHEMISTRY

Computational Framework for Identification of Intact Glycopeptides in Complex Samples

(2013) Anoop Mayampurath et al.   ANALYTICAL CHEMISTRY

High-sensitivity Analytical Approaches for the Structural Characterization of Glycoproteins

(2013) William R. Alley et al.   CHEMICAL REVIEWS

Site-Specific Glycan-Peptide Analysis for Determination of N-Glycoproteome Heterogeneity

(2013) Benjamin L. Parker et al.   JOURNAL OF PROTEOME RESEARCH

Sweet-Heart — An integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides

(2013) Sz-Wei Wu et al.   Journal of Proteomics

Glycoproteomic Analysis of the Secretome of Human Endothelial Cells

(2013) Xiaoke Yin et al.   MOLECULAR & CELLULAR PROTEOMICS

Software for automated interpretation of mass spectrometry data from glycans and glycopeptides

(2012) Carrie L. Woodin et al.   ANALYST

GlycoPep Grader: A Web-Based Utility for Assigning the Composition ofN-Linked Glycopeptides

(2012) Carrie L. Woodin et al.   ANALYTICAL CHEMISTRY

Direct Approach for Qualitative and Quantitative Characterization of Glycoproteins Using Tandem Mass Tags and an LTQ Orbitrap XL Electron Transfer Dissociation Hybrid Mass Spectrometer

(2012) Hongping Ye et al.   ANALYTICAL CHEMISTRY

Automated glycopeptide analysis--review of current state and future directions

(2012) D. C. Dallas et al.   BRIEFINGS IN BIOINFORMATICS

Higher Energy Collision Dissociation (HCD) Product Ion-Triggered Electron Transfer Dissociation (ETD) Mass Spectrometry for the Analysis of N-Linked Glycoproteins

(2012) Charandeep Singh et al.   JOURNAL OF PROTEOME RESEARCH

Gas-phase dissociation of glycosylated peptide ions

(2012) Eric D. Dodds   MASS SPECTROMETRY REVIEWS

Ultrasensitive Characterization of Site-Specific Glycosylation of Affinity-Purified Haptoglobin from Lung Cancer Patient Plasma Using 10 μm i.d. Porous Layer Open Tubular Liquid Chromatography−Linear Ion Trap Collision-Induced Dissociation/Electron Transfer Dissociation Mass Spectrometry

(2011) Dongdong Wang et al.   ANALYTICAL CHEMISTRY

Improved Peptide Identification by Targeted Fragmentation Using CID, HCD and ETD on an LTQ-Orbitrap Velos

(2011) Christian K. Frese et al.   JOURNAL OF PROTEOME RESEARCH

pParse: A method for accurate determination of monoisotopic peaks in high-resolution mass spectra

(2011) Zuo-F ei Yuan et al.   PROTEOMICS

GlycomeDB--a unified database for carbohydrate structures

(2010) R. Ranzinger et al.   NUCLEIC ACIDS RESEARCH

Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry

(2010) Yin Wu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Characterizing protein glycosylation sites through higher-energy C-trap dissociation

(2010) Zaneer M. Segu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

A Strategy for Precise and Large Scale Identification of Core Fucosylated Glycoproteins

(2009) Wei Jia et al.   MOLECULAR & CELLULAR PROTEOMICS

The development of retrosynthetic glycan libraries to profile and classify the human serum N-linked glycome

(2009) Scott R. Kronewitter et al.   PROTEOMICS

Bayesian Nonparametric Model for the Validation of Peptide Identification in Shotgun Proteomics

(2008) Jiyang Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS