MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities

A web-based protein interaction network visualizer

(2014) Gustavo A Salazar et al.   BMC BIOINFORMATICS

Matricryptins and matrikines: biologically active fragments of the extracellular matrix

(2014) Sylvie Ricard-Blum et al.   EXPERIMENTAL DERMATOLOGY

Activities at the Universal Protein Resource (UniProt)

(2014)   NUCLEIC ACIDS RESEARCH

Extended interaction network of procollagen C-proteinase enhancer-1 in the extracellular matrix

(2013) Romain Salza et al.   BIOCHEMICAL JOURNAL

BioJS: an open source JavaScript framework for biological data visualization

(2013) J. Gomez et al.   BIOINFORMATICS

Cytoscape App Store

(2013) S. Lotia et al.   BIOINFORMATICS

Heparin–protein interactions: From affinity and kinetics to biological roles. Application to an interaction network regulating angiogenesis

(2013) Franck Peysselon et al.   MATRIX BIOLOGY

mentha: a resource for browsing integrated protein-interaction networks

(2013) Alberto Calderone et al.   NATURE METHODS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Laminin-database v.2.0: an update on laminins in health and neuromuscular disorders

(2013) Daiane C. F. Golbert et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Towards definition of an ECM parts list: An advance on GO categories

(2012) Alexandra Naba et al.   MATRIX BIOLOGY

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

(2012) Sandra Orchard et al.   NATURE METHODS

InnateDB: systems biology of innate immunity and beyond—recent updates and continuing curation

(2012) Karin Breuer et al.   NUCLEIC ACIDS RESEARCH

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013

(2012) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2013 update

(2012) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

Toward a systems level view of the ECM and related proteins: A framework for the systematic definition and analysis of biological systems

(2012) Graham L. Cromar et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

TheCOL7A1mutation database

(2011) Katarzyna Wertheim-Tysarowska et al.   HUMAN MUTATION

D³ Data-Driven Documents

(2011) M. Bostock et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

A Systems Biology Approach for the Investigation of the Heparin/Heparan Sulfate Interactome

(2011) Alessandro Ori et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Matrisome:In SilicoDefinition andIn VivoCharacterization by Proteomics of Normal and Tumor Extracellular Matrices

(2011) Alexandra Naba et al.   MOLECULAR & CELLULAR PROTEOMICS

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

(2011) Bruno Aranda et al.   NATURE METHODS

InterPro in 2011: new developments in the family and domain prediction database

(2011) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Heparan Sulfate Proteoglycans

(2011) S. Sarrazin et al.   Cold Spring Harbor Perspectives in Biology

Interaction networks as a tool to investigate the mechanisms of aging

(2010) Emilie Chautard et al.   BIOGERONTOLOGY

The Ontology Lookup Service: bigger and better

(2010) R. Cote et al.   NUCLEIC ACIDS RESEARCH

MatrixDB, the extracellular matrix interaction database

(2010) E. Chautard et al.   NUCLEIC ACIDS RESEARCH

MatrixDB, a database focused on extracellular protein–protein and protein–carbohydrate interactions

(2009) Emilie Chautard et al.   BIOINFORMATICS

COLdb, a database linking genetic data to molecular function in fibrillar collagens

(2009) Dale L. Bodian et al.   HUMAN MUTATION

The First Draft of the Endostatin Interaction Network

(2009) Clément Faye et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH