Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Glyco-DIA: a method for quantitative O-glycoproteomics with in silico-boosted glycopeptide libraries
Authors
Keywords
-
Journal
NATURE METHODS
Volume 16, Issue 9, Pages 902-910
Publisher
Springer Science and Business Media LLC
Online
2019-08-06
DOI
10.1038/s41592-019-0504-x
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Development of a data independent acquisition mass spectrometry workflow to enable glycopeptide analysis without predefined glycan compositional knowledge
- (2018) Chi-Hung Lin et al. Journal of Proteomics
- Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial
- (2018) Christina Ludwig et al. Molecular Systems Biology
- Probing the contribution of individual polypeptide GalNAc-transferase isoforms to the O-glycoproteome by inducible expression in isogenic cell lines
- (2018) John Hintze et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data
- (2017) Ying S Ting et al. NATURE METHODS
- Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses
- (2017) George Rosenberger et al. NATURE METHODS
- Application of the broadband collision-induced dissociation (bbCID) mass spectrometry approach for protein glycosylation and phosphorylation analysis
- (2017) Narciso Couto et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Liquid chromatography-tandem mass spectrometry-based fragmentation analysis of glycopeptides
- (2016) Jonas Nilsson GLYCOCONJUGATE JOURNAL
- SWATH-MS Glycoproteomics Reveals Consequences of Defects in the Glycosylation Machinery
- (2016) Lucia F. Zacchi et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative O-Glycomics by Microwave-Assisted β-Elimination in the Presence of Pyrazolone Analogues
- (2015) Jun-ichi Furukawa et al. ANALYTICAL CHEMISTRY
- Carbamidomethylation Side Reactions May Lead to Glycan Misassignments in Glycopeptide Analysis
- (2015) Zsuzsanna Darula et al. ANALYTICAL CHEMISTRY
- Advances in mass spectrometry driven O-glycoproteomics
- (2015) Steven B. Levery et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
- Site-specificO-Glycosylation Analysis of Human Blood Plasma Proteins
- (2015) Marcus Hoffmann et al. MOLECULAR & CELLULAR PROTEOMICS
- Tissue-Specific Glycosylation at the Glycopeptide Level
- (2015) Katalin F. Medzihradszky et al. MOLECULAR & CELLULAR PROTEOMICS
- Extending the Limits of Quantitative Proteome Profiling with Data-Independent Acquisition and Application to Acetaminophen-Treated Three-Dimensional Liver Microtissues
- (2015) Roland Bruderer et al. MOLECULAR & CELLULAR PROTEOMICS
- Quantitative variability of 342 plasma proteins in a human twin population
- (2015) Y. Liu et al. Molecular Systems Biology
- A systematic study of modulation of ADAM-mediated ectodomain shedding by site-specific O-glycosylation
- (2015) Christoffer K. Goth et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Glycoproteomic Analysis of Prostate Cancer Tissues by SWATH Mass Spectrometry Discovers N-acylethanolamine Acid Amidase and Protein Tyrosine Kinase 7 as Signatures for Tumor Aggressiveness
- (2014) Yansheng Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- (2014) Juan A Vizcaíno et al. NATURE BIOTECHNOLOGY
- Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology
- (2013) Catharina Steentoft et al. EMBO JOURNAL
- Multiplexed and data-independent tandem mass spectrometry for global proteome profiling
- (2013) John D. Chapman et al. MASS SPECTROMETRY REVIEWS
- Total cellular glycomics allows characterizing cells and streamlining the discovery process for cellular biomarkers
- (2013) N. Fujitani et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- How to Dig Deeper? Improved Enrichment Methods for Mucin Core-1 Type Glycopeptides
- (2012) Z. Darula et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- Probing isoform-specific functions of polypeptide GalNAc-transferases using zinc finger nuclease glycoengineered SimpleCells
- (2012) K. T.- B. G. Schjoldager et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Universal and Confident Phosphorylation Site Localization Using phosphoRS
- (2011) Thomas Taus et al. JOURNAL OF PROTEOME RESEARCH
- mProphet: automated data processing and statistical validation for large-scale SRM experiments
- (2011) Lukas Reiter et al. NATURE METHODS
- Mining the O-glycoproteome using zinc-finger nuclease–glycoengineered SimpleCell lines
- (2011) Catharina Steentoft et al. NATURE METHODS
- Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides
- (2009) R. J. Chalkley et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started