pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification

The Art of Destruction: Optimizing Collision Energies in Quadrupole-Time of Flight (Q-TOF) Instruments for Glycopeptide-Based Glycoproteomics

(2016) Hannes Hinneburg et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Algorithms and design strategies towards automated glycoproteomics analysis

(2016) Han Hu et al.   MASS SPECTROMETRY REVIEWS

Integrated GlycoProteome Analyzer (I-GPA) for Automated Identification and Quantitation of Site-Specific N-Glycosylation

(2016) Gun Wook Park et al.   Scientific Reports

pGlyco: a pipeline for the identification of intact N-glycopeptides by using HCD- and CID-MS/MS and MS3

(2016) Wen-Feng Zeng et al.   Scientific Reports

MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach

(2015) Ke-Shiuan Lynn et al.   ANALYTICAL CHEMISTRY

Characterizing Sialic Acid Variants at the Glycopeptide Level

(2015) Katalin F. Medzihradszky et al.   ANALYTICAL CHEMISTRY

GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides

(2015) Shadi Toghi Eshghi et al.   ANALYTICAL CHEMISTRY

Integrated Proteomic and Glycoproteomic Analyses of Prostate Cancer Cells Reveal Glycoprotein Alteration in Protein Abundance and Glycosylation

(2015) Punit Shah et al.   MOLECULAR & CELLULAR PROTEOMICS

Tissue-Specific Glycosylation at the Glycopeptide Level

(2015) Katalin F. Medzihradszky et al.   MOLECULAR & CELLULAR PROTEOMICS

Comprehensive analysis of protein glycosylation by solid-phase extraction of N-linked glycans and glycosite-containing peptides

(2015) Shisheng Sun et al.   NATURE BIOTECHNOLOGY

Isotope-targeted glycoproteomics (IsoTaG): a mass-independent platform for intact N- and O-glycopeptide discovery and analysis

(2015) Christina M Woo et al.   NATURE METHODS

One-hour proteome analysis in yeast

(2015) Alicia L Richards et al.   Nature Protocols

Novel LC-MS2 Product Dependent Parallel Data Acquisition Function and Data Analysis Workflow for Sequencing and Identification of Intact Glycopeptides

(2014) Sz-Wei Wu et al.   ANALYTICAL CHEMISTRY

Strategy Integrating Stepped Fragmentation and Glycan Diagnostic Ion-Based Spectrum Refinement for the Identification of Core Fucosylated Glycoproteome Using Mass Spectrometry

(2014) Qichen Cao et al.   ANALYTICAL CHEMISTRY

pQuant Improves Quantitation by Keeping out Interfering Signals and Evaluating the Accuracy of Calculated Ratios

(2014) Chao Liu et al.   ANALYTICAL CHEMISTRY

Efficient and Accurate Glycopeptide Identification Pipeline for High-Throughput Site-Specific N-Glycosylation Analysis

(2014) Mingqi Liu et al.   JOURNAL OF PROTEOME RESEARCH

GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry

(2014) Lin He et al.   JOURNAL OF PROTEOME RESEARCH

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method

(2014) Kai Cheng et al.   Journal of Proteomics

Automated Assignments of N- and O-Site Specific Glycosylation with Extensive Glycan Heterogeneity of Glycoprotein Mixtures

(2013) John S. Strum et al.   ANALYTICAL CHEMISTRY

GlycoPep Detector: A Tool for Assigning Mass Spectrometry Data of N-Linked Glycopeptides on the Basis of Their Electron Transfer Dissociation Spectra

(2013) Zhikai Zhu et al.   ANALYTICAL CHEMISTRY

Computational Framework for Identification of Intact Glycopeptides in Complex Samples

(2013) Anoop Mayampurath et al.   ANALYTICAL CHEMISTRY

High-sensitivity Analytical Approaches for the Structural Characterization of Glycoproteins

(2013) William R. Alley et al.   CHEMICAL REVIEWS

Site-Specific Glycan-Peptide Analysis for Determination of N-Glycoproteome Heterogeneity

(2013) Benjamin L. Parker et al.   JOURNAL OF PROTEOME RESEARCH

Exploring Site-Specific N-Glycosylation Microheterogeneity of Haptoglobin Using Glycopeptide CID Tandem Mass Spectra and Glycan Database Search

(2013) Kevin Brown Chandler et al.   JOURNAL OF PROTEOME RESEARCH

Sweet-Heart — An integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides

(2013) Sz-Wei Wu et al.   Journal of Proteomics

Glycopeptide Analysis, Recent Developments and Applications

(2013) Heather Desaire   MOLECULAR & CELLULAR PROTEOMICS

Automated glycopeptide analysis--review of current state and future directions

(2012) D. C. Dallas et al.   BRIEFINGS IN BIOINFORMATICS

Gas-phase dissociation of glycosylated peptide ions

(2012) Eric D. Dodds   MASS SPECTROMETRY REVIEWS

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Simultaneous and Extensive Site-specific N- and O-Glycosylation Analysis in Protein Mixtures

(2011) Charles C. Nwosu et al.   JOURNAL OF PROTEOME RESEARCH

Human Urinary Glycoproteomics; Attachment Site Specific Analysis ofN- andO-Linked Glycosylations by CID and ECD

(2011) Adnan Halim et al.   MOLECULAR & CELLULAR PROTEOMICS

pParse: A method for accurate determination of monoisotopic peaks in high-resolution mass spectra

(2011) Zuo-F ei Yuan et al.   PROTEOMICS

Glycomics Hits the Big Time

(2010) Gerald W. Hart et al.   CELL

Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints

(2010) Dorota F. Zielinska et al.   CELL