Epigenetic Mechanisms of Plant Adaptation to Biotic and Abiotic Stresses

Identification of introduced and stably inherited DNA methylation variants in soybean associated with soybean cyst nematode parasitism

(2020) Aditi Rambani et al.   NEW PHYTOLOGIST

Extending the Genotype in Brachypodium by Including DNA Methylation Reveals a Joint Contribution with Genetics on Adaptive Traits

(2020) Steven R. Eichten et al.   G3-Genes Genomes Genetics

The Histone Marks Signature in Exonic and Intronic Regions Is Relevant in Early Response of Tomato Genes to Botrytis cinerea and in miRNA Regulation

(2020) Óscar Crespo-Salvador et al.   Plants-Basel

The physiology of plant responses to drought

(2020) Aditi Gupta et al.   SCIENCE

Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis

(2019) Leonardo Furci et al.   eLife

Transgenerational memory of gene expression changes induced by heavy metal stress in rice (Oryza sativa L.)

(2019) Weixuan Cong et al.   BMC PLANT BIOLOGY

Living with Two Genomes: Grafting and Its Implications for Plant Genome-to-Genome Interactions, Phenotypic Variation, and Evolution

(2019) Brandon S. Gaut et al.   Annual Review of Genetics

The Polycomb protein LHP 1 regulates Arabidopsis thaliana stress responses through the repression of the MYC 2‐dependent branch of immunity

(2019) J.S. Ramirez‐Prado et al.   PLANT JOURNAL

A Role for PICKLE in the Regulation of Cold and Salt Stress Tolerance in Arabidopsis

(2019) Rong Yang et al.   Frontiers in Plant Science

Epigenetic Differentiation of Natural Populations of Lilium bosniacum Associated with Contrasting Habitat Conditions

(2018) Vlatka Zoldoš et al.   Genome Biology and Evolution

Epigenetic regulation of intragenic transposable elements: A two-edged sword

(2018) Hidetoshi Saze   JOURNAL OF BIOCHEMISTRY

Plasticity of DNA methylation and gene expression under zinc deficiency in Arabidopsis roots

(2018) Xiaochao Chen et al.   PLANT AND CELL PHYSIOLOGY

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis

(2018) Benjamin Carter et al.   PLANT CELL

Epigenetic switch from repressive to permissive chromatin in response to cold stress

(2018) Junghoon Park et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant Immunity: From Signaling to Epigenetic Control of Defense

(2018) Juan S. Ramirez-Prado et al.   TRENDS IN PLANT SCIENCE

Increased transgenerational epigenetic variation, but not predictable epigenetic variants, after environmental exposure in two apomictic dandelion lineages

(2018) Veronica Preite et al.   Ecology and Evolution

Natural variation of DNA methylation and gene expression may determine local adaptations of Scots pine populations

(2018) Emmi Alakärppä et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNAs from the parasitic plant Cuscuta campestris target host messenger RNAs

(2018) Saima Shahid et al.   NATURE

Evolution and Diversification of Small RNA Pathways in Flowering Plants

(2018) Chin Hong Lee et al.   PLANT AND CELL PHYSIOLOGY

Epigenetic Environmental Memories in Plants: Establishment, Maintenance, and Reprogramming

(2018) Yuehui He et al.   TRENDS IN GENETICS

BABA-Primed Histone Modifications in Potato for Intergenerational Resistance to Phytophthora infestans

(2018) Barbara Meller et al.   Frontiers in Plant Science

The transcriptome of zinc deficient maize roots and its relationship to DNA methylation loss

(2018) Svenja Mager et al.   BMC PLANT BIOLOGY

Quantitative resistance to clubroot infection mediated by transgenerational epigenetic variation in Arabidopsis

(2018) Benjamin Liégard et al.   NEW PHYTOLOGIST

Defence-related priming and responses to recurring drought: Two manifestations of plant transcriptional memory mediated by the ABA and JA signalling pathways

(2018) Zoya Avramova   PLANT CELL AND ENVIRONMENT

Variability in DNA Methylation and Generational Plasticity in the Lombardy Poplar, a Single Genotype Worldwide Distributed Since the Eighteenth Century

(2018) An Vanden Broeck et al.   Frontiers in Plant Science

Arabidopsism6A demethylase activity modulates viral infection of a plant virus and the m6A abundance in its genomic RNAs

(2017) Mireya Martínez-Pérez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional Regulatory Network of Plant Heat Stress Response

(2017) Naohiko Ohama et al.   TRENDS IN PLANT SCIENCE

Transgenerational epimutations induced by multi-generation drought imposition mediate rice plant’s adaptation to drought condition

(2017) Xiaoguo Zheng et al.   Scientific Reports

DNA Methylation and Demethylation in Plant Immunity

(2016) A. Deleris et al.   Annual Review of Phytopathology

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials

(2016) C. M. Foust et al.   MOLECULAR ECOLOGY

Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage

(2016) Rutger A. Wilschut et al.   MOLECULAR ECOLOGY

The multivariate association between genomewide DNA methylation and climate across the range ofArabidopsis thaliana

(2016) Thomas E. Keller et al.   MOLECULAR ECOLOGY

Comparative spatial genetics and epigenetics of plant populations: heuristic value and a proof of concept

(2016) Carlos M. Herrera et al.   MOLECULAR ECOLOGY

Global regulation of plant immunity by histone lysine methyl transferases

(2016) Sanghun Lee et al.   PLANT CELL

The role of DNA (de)methylation in immune responsiveness of Arabidopsis

(2016) Ana López Sánchez et al.   PLANT JOURNAL

Epigenetic variability in plants: Heritability, adaptability, evolutionary significance

(2016) V. V. Ashapkin et al.   RUSSIAN JOURNAL OF PLANT PHYSIOLOGY

A Stress-Activated Transposon in Arabidopsis Induces Transgenerational Abscisic Acid Insensitivity

(2016) Hidetaka Ito et al.   Scientific Reports

RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants

(2015) Marjori A. Matzke et al.   Annual Review of Plant Biology

Comparative analysis of DNA methylation changes in two rice genotypes under salt stress and subsequent recovery

(2015) Wensheng Wang et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement

(2015) Cécile Vriet et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

A hit-and-run heat shock factor governs sustained histone methylation and transcriptional stress memory

(2015) J. La mke et al.   EMBO JOURNAL

Salt-induced transcription factorMYB74is regulated by the RNA-directed DNA methylation pathway inArabidopsis

(2015) Rui Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Stable methylation of a non-coding RNA gene regulates gene expression in response to abiotic stress inPopulus simonii

(2015) Yuepeng Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

The epigenetic footprint of poleward range-expanding plants in apomictic dandelions

(2015) V. Preite et al.   MOLECULAR ECOLOGY

Transcriptional ‘memory’ of a stress: transient chromatin and memory (epigenetic) marks at stress-response genes

(2015) Zoya Avramova   PLANT JOURNAL

GENERAL CONTROL NONREPRESSED PROTEIN5-Mediated Histone Acetylation ofFERRIC REDUCTASE DEFECTIVE3Contributes to Iron Homeostasis in Arabidopsis

(2015) Jiewen Xing et al.   PLANT PHYSIOLOGY

The Methylome of Soybean Roots during the Compatible Interaction with the Soybean Cyst Nematode

(2015) Aditi Rambani et al.   PLANT PHYSIOLOGY

Methylome analysis reveals an important role for epigenetic changes in the regulation of theArabidopsisresponse to phosphate starvation

(2015) Lenin Yong-Villalobos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

(2015) Manu J Dubin et al.   eLife

Chromatin changes in response to drought, salinity, heat, and cold stresses in plants

(2015) Jong-Myong Kim et al.   Frontiers in Plant Science

Parasitic plants of the genus Cuscuta and their interaction with susceptible and resistant host plants

(2015) Bettina Kaiser et al.   Frontiers in Plant Science

A small RNA mediated regulation of a stress-activated retrotransposon and the tissue specific transposition during the reproductive period in Arabidopsis

(2015) Wataru Matsunaga et al.   Frontiers in Plant Science

Salt Tolerant and Sensitive Rice Varieties Display Differential Methylome Flexibility under Salt Stress

(2015) Liliana J. Ferreira et al.   PLoS One

Single-base-resolution methylomes of populus trichocarpa reveal the association between DNA methylation and drought stress

(2014) Dan Liang et al.   BMC GENETICS

H3K27me3 and H3K4me3 Chromatin Environment at Super-Induced Dehydration Stress Memory Genes of Arabidopsis thaliana

(2014) Ning Liu et al.   Molecular Plant

Physiological and transcriptional memory in guard cells during repetitive dehydration stress

(2014) Laetitia Virlouvet et al.   NEW PHYTOLOGIST

Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes

(2014) Ning Liu et al.   NUCLEIC ACIDS RESEARCH

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation

(2014) S. R. Eichten et al.   PLANT PHYSIOLOGY

Genomic-scale exchange of mRNA between a parasitic plant and its hosts

(2014) G. Kim et al.   SCIENCE

Heat-Induced Release of Epigenetic Silencing Reveals the Concealed Role of an Imprinted Plant Gene

(2014) Diego H. Sanchez et al.   PLoS Genetics

How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation

(2014) Vladimir V. Cavrak et al.   PLoS Genetics

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

(2013) Yong Ding et al.   BMC PLANT BIOLOGY

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

The RdDM Pathway Is Required for Basal Heat Tolerance in Arabidopsis

(2013) Olga V. Popova et al.   Molecular Plant

Patterns of population epigenomic diversity

(2013) Robert J. Schmitz et al.   NATURE

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Quantification of tomato andArabidopsismobile RNAs trafficking into the parasitic plantCuscuta pentagona

(2013) Megan LeBlanc et al.   NEW PHYTOLOGIST

ALFIN-LIKE 6 is involved in root hair elongation during phosphate deficiency in Arabidopsis

(2013) Nulu Naga Prafulla Chandrika et al.   NEW PHYTOLOGIST

SKB1/PRMT5-mediated histone H4R3 dimethylation of Ib subgroup bHLH genes negatively regulates iron homeostasis inArabidopsis thaliana

(2013) Huajie Fan et al.   PLANT JOURNAL

Transgenerational Variations in DNA Methylation Induced by Drought Stress in Two Rice Varieties with Distinguished Difference to Drought Resistance

(2013) Xiaoguo Zheng et al.   PLoS One

Dynamics and biological relevance of DNA demethylation in Arabidopsis antibacterial defense

(2013) A. Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

Epigenetic responses to stress: triple defense?

(2012) Ruben Gutzat et al.   CURRENT OPINION IN PLANT BIOLOGY

Invasion of diverse habitats by few Japanese knotweed genotypes is correlated with epigenetic differentiation

(2012) Christina L. Richards et al.   ECOLOGY LETTERS

Interspecific RNA Interference of SHOOT MERISTEMLESS-Like Disrupts Cuscuta pentagona Plant Parasitism

(2012) A. Alakonya et al.   PLANT CELL

Transgenerational Inheritance of Modified DNA Methylation Patterns and Enhanced Tolerance Induced by Heavy Metal Stress in Rice (Oryza sativa L.)

(2012) Xiufang Ou et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic and epigenomic variation in Arabidopsis thaliana

(2012) Robert J. Schmitz et al.   TRENDS IN PLANT SCIENCE

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

Histone modifications in transcriptional activation during plant development

(2011) Alexandre Berr et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

DNA methylation in higher plants: Past, present and future

(2011) Boris F. Vanyushin et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Epigenetic modifications in plants: an evolutionary perspective

(2011) Suhua Feng et al.   CURRENT OPINION IN PLANT BIOLOGY

Epigenetic contribution to stress adaptation in plants

(2011) Marie Mirouze et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome instability and epigenetic modification—heritable responses to environmental stress?

(2011) Alex Boyko et al.   CURRENT OPINION IN PLANT BIOLOGY

An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress

(2011) Hidetaka Ito et al.   NATURE

The effects of heat induction and the siRNA biogenesis pathway on the transgenerational transposition of ONSEN, a copia-like retrotransposon in Arabidopsis thaliana

(2011) W. Matsunaga et al.   PLANT AND CELL PHYSIOLOGY

The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways

(2011) Yong Ding et al.   PLANT JOURNAL

Herbivory in the Previous Generation Primes Plants for Enhanced Insect Resistance

(2011) S. Rasmann et al.   PLANT PHYSIOLOGY

HIGH NITROGEN INSENSITIVE 9 (HNI9)-mediated systemic repression of root NO3−uptake is associated with changes in histone methylation

(2011) Thomas Widiez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Transgenerational Plasticity in Plants: Case Studies, Mechanisms, and Implications for Natural Populations

(2011) Jacob J. Herman et al.   Frontiers in Plant Science

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Regulated AtHKT1 Gene Expression by a Distal Enhancer Element and DNA Methylation in the Promoter Plays an Important Role in Salt Tolerance

(2010) Dongwon Baek et al.   PLANT AND CELL PHYSIOLOGY

Epigenetic Variation in Mangrove Plants Occurring in Contrasting Natural Environment

(2010) Catarina Fonseca Lira-Medeiros et al.   PLoS One

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

Stress-induced DNA methylation changes and their heritability in asexual dandelions

(2009) Koen J. F. Verhoeven et al.   NEW PHYTOLOGIST

DNA demethylation by DNA repair

(2009) Mary Gehring et al.   TRENDS IN GENETICS

Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana

(2009) Xiaoyu Zhang et al.   GENOME BIOLOGY

Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana

(2008) Yana V. Bernatavichute et al.   PLoS One

Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis

(2008) Hye Ryun Woo et al.   PLoS Genetics