Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
Authors
Keywords
-
Journal
eLife
Volume 4, Issue -, Pages -
Publisher
eLife Sciences Organisation, Ltd.
Online
2015-07-21
DOI
10.7554/elife.09343
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Epigenetic transitions leading to heritable, RNA-mediated de novo silencing inArabidopsis thaliana
- (2015) Donna M. Bond et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage
- (2015) Jörg Hagmann et al. PLoS Genetics
- Single-base-resolution methylomes of populus trichocarpa reveal the association between DNA methylation and drought stress
- (2014) Dan Liang et al. BMC GENETICS
- Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis
- (2014) T. Baubec et al. EMBO REPORTS
- Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes
- (2014) M. Mirouze et al. JOURNAL OF EXPERIMENTAL BOTANY
- miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis
- (2014) Kate M. Creasey et al. NATURE
- Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state
- (2014) Pedro Crevillén et al. NATURE
- RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
- (2014) Marjori A. Matzke et al. NATURE REVIEWS GENETICS
- NITROGEN LIMITATION ADAPTATION Recruits PHOSPHATE2 to Target the Phosphate Transporter PT2 for Degradation during the Regulation of Arabidopsis Phosphate Homeostasis
- (2014) B. S. Park et al. PLANT CELL
- Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
- (2014) L. Wei et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner
- (2014) Z. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SPX1 is a phosphate-dependent inhibitor of PHOSPHATE STARVATION RESPONSE 1 in Arabidopsis
- (2014) M. I. Puga et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of genes preventing transgenerational transmission of stress-induced epigenetic states
- (2014) M. Iwasaki et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Estimation of False Discovery Rate Using Sequential Permutationp-Values
- (2013) Tim Bancroft et al. BIOMETRICS
- The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
- (2013) Assaf Zemach et al. CELL
- Rice epigenomics and epigenetics: challenges and opportunities
- (2013) Xiangsong Chen et al. CURRENT OPINION IN PLANT BIOLOGY
- Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
- (2013) Silin Zhong et al. NATURE BIOTECHNOLOGY
- Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks
- (2013) Q. Fei et al. PLANT CELL
- NITROGEN LIMITATION ADAPTATION, a Target of MicroRNA827, Mediates Degradation of Plasma Membrane-Localized Phosphate Transporters to Maintain Phosphate Homeostasis in Arabidopsis
- (2013) W.-Y. Lin et al. PLANT CELL
- Spatio-Temporal Transcript Profiling of Rice Roots and Shoots in Response to Phosphate Starvation and Recovery
- (2013) D. Secco et al. PLANT CELL
- Epigenetic mechanisms of plant stress responses and adaptation
- (2013) Pranav Pankaj Sahu et al. PLANT CELL REPORTS
- The Initiation of Epigenetic Silencing of Active Transposable Elements Is Triggered by RDR6 and 21-22 Nucleotide Small Interfering RNAs
- (2013) S. Nuthikattu et al. PLANT PHYSIOLOGY
- Cytosine Methylation Alteration in Natural Populations of Leymus chinensis Induced by Multiple Abiotic Stresses
- (2013) Yingjie Yu et al. PLoS One
- Global Epigenomic Reconfiguration During Mammalian Brain Development
- (2013) R. Lister et al. SCIENCE
- Arguments for standardizing transposable element annotation in plant genomes
- (2013) Raja Ragupathy et al. TRENDS IN PLANT SCIENCE
- Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
- (2012) Xin Li et al. BMC GENOMICS
- Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants
- (2012) Jiamu Du et al. CELL
- Recent Retrotransposon Insertions Are Methylated and Phylogenetically Clustered in Japonica Rice (Oryza sativa spp. japonica)
- (2012) Bridgett M. vonHoldt et al. MOLECULAR BIOLOGY AND EVOLUTION
- Differential analysis of gene regulation at transcript resolution with RNA-seq
- (2012) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- The emerging importance of the SPX domain-containing proteins in phosphate homeostasis
- (2012) David Secco et al. NEW PHYTOLOGIST
- Stress-Induced Chromatin Changes: A Critical View on Their Heritability
- (2012) A. Pecinka et al. PLANT AND CELL PHYSIOLOGY
- Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes
- (2012) Ratna Karan et al. PLoS One
- Bioinformatic Analysis of Epigenetic and MicroRNA Mediated Regulation of Drought Responsive Genes in Rice
- (2012) Rafi Shaik et al. PLoS One
- Widespread dynamic DNA methylation in response to biotic stress
- (2012) R. H. Dowen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Spreading of Heterochromatin Is Limited to Specific Families of Maize Retrotransposons
- (2012) Steven R. Eichten et al. PLoS Genetics
- Epialleles in plant evolution
- (2012) Detlef Weigel et al. GENOME BIOLOGY
- Signaling Network in Sensing Phosphate Availability in Plants
- (2011) Tzyy-Jen Chiou et al. Annual Review of Plant Biology
- Computing the confidence levels for a root-mean-square test of goodness-of-fit
- (2011) William Perkins et al. APPLIED MATHEMATICS AND COMPUTATION
- Transgenerational epigenetic inheritance in plants
- (2011) Marie-Theres Hauser et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice
- (2011) Yutaka Sato et al. BMC PLANT BIOLOGY
- DNA methylation changes detected by methylation-sensitive amplified polymorphism in two contrasting rice genotypes under salt stress
- (2011) Wensheng Wang et al. Journal of Genetics and Genomics
- Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
- (2011) Claude Becker et al. NATURE
- Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
- (2011) Ikhlak Ahmed et al. NUCLEIC ACIDS RESEARCH
- Arabidopsis thalianaHigh-Affinity Phosphate Transporters Exhibit Multiple Levels of Posttranslational Regulation
- (2011) Vincent Bayle et al. PLANT CELL
- Roles of DCL4 and DCL3b in rice phased small RNA biogenesis
- (2011) Xianwei Song et al. PLANT JOURNAL
- Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
- (2011) R. J. Schmitz et al. SCIENCE
- Genetic Regulation by NLA and MicroRNA827 for Maintaining Nitrate-Dependent Phosphate Homeostasis in Arabidopsis
- (2011) Surya Kant et al. PLoS Genetics
- Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.)
- (2010) Wen-Sheng Wang et al. JOURNAL OF EXPERIMENTAL BOTANY
- DNA Methylation Mediated by a MicroRNA Pathway
- (2010) Liang Wu et al. MOLECULAR CELL
- Regulation of Phosphate Starvation Responses in Plants: Signaling Players and Cross-Talks
- (2010) Hatem Rouached et al. Molecular Plant
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- (2010) Julie A. Law et al. NATURE REVIEWS GENETICS
- Small RNAs from MITE-derived stem-loop precursors regulate abscisic acid signaling and abiotic stress responses in rice
- (2010) Yongsheng Yan et al. PLANT JOURNAL
- Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins
- (2010) Alex Boyko et al. PLoS One
- Conservation and divergence of methylation patterning in plants and animals
- (2010) S. Feng et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- (2010) A. Zemach et al. SCIENCE
- Epigenetic regulation of stress responses in plants
- (2009) Viswanathan Chinnusamy et al. CURRENT OPINION IN PLANT BIOLOGY
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- Histone H2A.Z Regulates the Expression of Several Classes of Phosphate Starvation Response Genes But Not as a Transcriptional Activator
- (2009) A. P. Smith et al. PLANT PHYSIOLOGY
- Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
- (2008) Ryan Lister et al. CELL
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- (2008) Shawn J. Cokus et al. NATURE
- AtCopeg1, the unique gene originated from AtCopia95 retrotransposon family, is sensitive to external hormones and abiotic stresses
- (2008) Ke Duan et al. PLANT CELL REPORTS
- Involvement ofOsSPX1in phosphate homeostasis in rice
- (2008) Chuang Wang et al. PLANT JOURNAL
- Type-B monogalactosyldiacylglycerol synthases are involved in phosphate starvation-induced lipid remodeling, and are crucial for low-phosphate adaptation
- (2008) Koichi Kobayashi et al. PLANT JOURNAL
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More