Transcriptional ‘memory’ of a stress: transient chromatin and memory (epigenetic) marks at stress-response genes

Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement

(2015) Cécile Vriet et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Polycomb and Trithorax group protein-mediated control of stress responses in plants

(2014) Julia Anna Kleinmanns et al.   BIOLOGICAL CHEMISTRY

Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

(2014) Yong Ding et al.   BMC PLANT BIOLOGY

The Role of the Epigenome in Gene Expression Control and the Epimark Changes in Response to the Environment

(2014) Michael J. Van Oosten et al.   CRITICAL REVIEWS IN PLANT SCIENCES

ATX1/AtCOMPASS and the H3K4me3 marks: how do they activate Arabidopsis genes?

(2014) Michael Fromm et al.   CURRENT OPINION IN PLANT BIOLOGY

Life and death under salt stress: same players, different timing?

(2014) Ahmed Ismail et al.   JOURNAL OF EXPERIMENTAL BOTANY

Improved tolerance to drought stress after anthesis due to priming before anthesis in wheat (Triticum aestivum L.) var. Vinjett

(2014) Xiao Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Two-Step Process for Epigenetic Inheritance in Arabidopsis

(2014) Todd Blevins et al.   MOLECULAR CELL

H3K27me3 and H3K4me3 Chromatin Environment at Super-Induced Dehydration Stress Memory Genes of Arabidopsis thaliana

(2014) Ning Liu et al.   Molecular Plant

Histone Lysine Methyltransferase SDG8 Is Involved in Brassinosteroid-Regulated Gene Expression in Arabidopsis thaliana

(2014) Xiaolei Wang et al.   Molecular Plant

Physiological and transcriptional memory in guard cells during repetitive dehydration stress

(2014) Laetitia Virlouvet et al.   NEW PHYTOLOGIST

Different gene-specific mechanisms determine the ‘revised-response’ memory transcription patterns of a subset of A. thaliana dehydration stress responding genes

(2014) Ning Liu et al.   NUCLEIC ACIDS RESEARCH

Epigenetic Memory for Stress Response and Adaptation in Plants

(2014) Tetsu Kinoshita et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis miR156 Regulates Tolerance to Recurring Environmental Stress through SPL Transcription Factors

(2014) A. Stief et al.   PLANT CELL

ABA signaling is necessary but not sufficient forRD29Btranscriptional memory during successive dehydration stresses inArabidopsis thaliana

(2014) Laetitia Virlouvet et al.   PLANT JOURNAL

Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation

(2014) S. R. Eichten et al.   PLANT PHYSIOLOGY

Identification of genes preventing transgenerational transmission of stress-induced epigenetic states

(2014) M. Iwasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcript elongation factors: shaping transcriptomes after transcript initiation

(2014) Mieke Van Lijsebettens et al.   TRENDS IN PLANT SCIENCE

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Epigenetic Regulation in Plant Responses to the Environment

(2014) D. C. Baulcombe et al.   Cold Spring Harbor Perspectives in Biology

Epigenetic regulation of gene responsiveness in Arabidopsis

(2014) Taiko K. To et al.   Frontiers in Plant Science

A chromatin modifying enzyme, SDG8, is involved in morphological, gene expression, and epigenetic responses to mechanical stimulation

(2014) Christopher I. Cazzonelli et al.   Frontiers in Plant Science

Direct measurement of transcription rates reveals multiple mechanisms for configuration of the Arabidopsis ambient temperature response

(2014) Kate Sidaway-Lee et al.   GENOME BIOLOGY

Non-coding RNAs and DNA methylation in plants

(2014) Yuanyuan Zhao et al.   National Science Review

Control of Transcriptional Elongation

(2013) Hojoong Kwak et al.   Annual Review of Genetics

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

(2013) Yong Ding et al.   BMC PLANT BIOLOGY

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Chromatin: Receiver and Quarterback for Cellular Signals

(2013) David G. Johnson et al.   CELL

Chromatin and signaling

(2013) Tamaki Suganuma et al.   CURRENT OPINION IN CELL BIOLOGY

Role of chromatin in water stress responses in plants

(2013) Soon-Ki Han et al.   JOURNAL OF EXPERIMENTAL BOTANY

Variations on a theme: Polycomb group proteins in plants

(2013) Maria Derkacheva et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Polycomb Complex PRC1: Composition and Function in Plants

(2013) Anne Molitor et al.   Journal of Genetics and Genomics

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

(2013) Stephane E. Castel et al.   NATURE REVIEWS GENETICS

Emerging roles for chromatin as a signal integration and storage platform

(2013) Aimee I. Badeaux et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Jumonji C Domain Protein JMJ705-Mediated Removal of Histone H3 Lysine 27 Trimethylation Is Involved in Defense-Related Gene Activation in Rice

(2013) T. Li et al.   PLANT CELL

The Cold Signaling Attenuator HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Activates FLOWERING LOCUS C Transcription via Chromatin Remodeling under Short-Term Cold Stress in Arabidopsis

(2013) J.-H. Jung et al.   PLANT CELL

Histone Deacetylase Complex1 Expression Level Titrates Plant Growth and Abscisic Acid Sensitivity in Arabidopsis

(2013) G. Perrella et al.   PLANT CELL

Stochastic expression and epigenetic memory at the yeastHOpromoter

(2013) Qian Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics & chromatin: interactions and processes

(2013) Steven Henikoff et al.   Epigenetics & Chromatin

Epigenetic responses to stress: triple defense?

(2012) Ruben Gutzat et al.   CURRENT OPINION IN PLANT BIOLOGY

The catalytic subunit of Arabidopsis DNA polymerase   ensures stable maintenance of histone modification

(2012) Y. Hyun et al.   DEVELOPMENT

Cellular Memory of Acquired Stress Resistance in Saccharomyces cerevisiae

(2012) Q. Guan et al.   GENETICS

Pivotal role of the AREB/ABF-SnRK2 pathway in ABRE-mediated transcription in response to osmotic stress in plants

(2012) Yasunari Fujita et al.   PHYSIOLOGIA PLANTARUM

Stress-Induced Chromatin Changes: A Critical View on Their Heritability

(2012) A. Pecinka et al.   PLANT AND CELL PHYSIOLOGY

An Epigenetic Integrator: New Insights into Genome Regulation, Environmental Stress Responses and Developmental Controls by HISTONE DEACETYLASE 6

(2012) J.-M. Kim et al.   PLANT AND CELL PHYSIOLOGY

DNA Methylation in Plants: Relationship to Small RNAs and Histone Modifications, and Functions in Transposon Inactivation

(2012) H. Saze et al.   PLANT AND CELL PHYSIOLOGY

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

The SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Represses Abscisic Acid Responses in the Absence of the Stress Stimulus in Arabidopsis

(2012) S.-K. Han et al.   PLANT CELL

Heat Shock Factor HsfB1 Primes Gene Transcription and Systemic Acquired Resistance in Arabidopsis

(2012) T. Pick et al.   PLANT PHYSIOLOGY

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

Transgenerational Effects of Stress Exposure on Offspring Phenotypes in Apomictic Dandelion

(2012) Koen J.F. Verhoeven et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Epigenetic and epigenomic variation in Arabidopsis thaliana

(2012) Robert J. Schmitz et al.   TRENDS IN PLANT SCIENCE

MAP kinases and histone modification

(2012) T. Suganuma et al.   Journal of Molecular Cell Biology

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

ATX1-Generated H3K4me3 Is Required for Efficient Elongation of Transcription, Not Initiation, at ATX1-Regulated Genes

(2012) Yong Ding et al.   PLoS Genetics

Transgenerational epigenetic inheritance in plants

(2011) Marie-Theres Hauser et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genome instability and epigenetic modification—heritable responses to environmental stress?

(2011) Alex Boyko et al.   CURRENT OPINION IN PLANT BIOLOGY

Selected aspects of transgenerational epigenetic inheritance and resetting in plants

(2011) Jerzy Paszkowski et al.   CURRENT OPINION IN PLANT BIOLOGY

DrosophilaSet1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription

(2011) M Behfar Ardehali et al.   EMBO JOURNAL

Histone Methylation by PRC2 Is Inhibited by Active Chromatin Marks

(2011) Frank W. Schmitges et al.   MOLECULAR CELL

Regulation of disease-responsive genes mediated by epigenetic factors: interaction of Arabidopsis-Pseudomonas

(2011) CLELIA DE-LA-PEÑA et al.   MOLECULAR PLANT PATHOLOGY

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Trithorax group proteins: switching genes on and keeping them active

(2011) Bernd Schuettengruber et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A cytoplasm-specific activity encoded by the Trithorax-like ATX1 gene

(2011) Ivan Ndamukong et al.   NUCLEIC ACIDS RESEARCH

Transcription Regulation of Abiotic Stress Responses in Rice: A Combined Action of Transcription Factors and Epigenetic Mechanisms

(2011) Ana Paula Santos et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Tissue-Specific Expression ofFLOWERING LOCUS TinArabidopsisIs Maintained Independently of Polycomb Group Protein Repression

(2011) Sara Farrona et al.   PLANT CELL

Two Distinct Roles of ARABIDOPSIS HOMOLOG OF TRITHORAX1 (ATX1) at Promoters and within Transcribed Regions of ATX1-Regulated Genes

(2011) Yong Ding et al.   PLANT CELL

The low temperature response pathways for cold acclimation and vernalization are independent

(2011) DONNA M. BOND et al.   PLANT CELL AND ENVIRONMENT

The Arabidopsis trithorax-like factor ATX1 functions in dehydration stress responses via ABA-dependent and ABA-independent pathways

(2011) Yong Ding et al.   PLANT JOURNAL

Descendants of Primed Arabidopsis Plants Exhibit Resistance to Biotic Stress

(2011) A. Slaughter et al.   PLANT PHYSIOLOGY

Herbivory in the Previous Generation Primes Plants for Enhanced Insect Resistance

(2011) S. Rasmann et al.   PLANT PHYSIOLOGY

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Chromatin and heritability: how epigenetic studies can complement genetic approaches

(2011) Ewan Birney   TRENDS IN GENETICS

Histone modification: cause or cog?

(2011) Steven Henikoff et al.   TRENDS IN GENETICS

Molecular aspects of defence priming

(2011) Uwe Conrath   TRENDS IN PLANT SCIENCE

Multiple Means to the Same End: The Genetic Basis of Acquired Stress Resistance in Yeast

(2011) David B. Berry et al.   PLoS Genetics

Dynamic Changes in Genome-Wide Histone H3 Lysine 4 Methylation Patterns in Response to Dehydration Stress in Arabidopsis thaliana

(2010) Karin van Dijk et al.   BMC PLANT BIOLOGY

Keeping Cell Identity in Arabidopsis Requires PRC1 RING-Finger Homologs that Catalyze H2A Monoubiquitination

(2010) Fabian Bratzel et al.   CURRENT BIOLOGY

Zygotic Resetting of the HISTONE 3 Variant Repertoire Participates in Epigenetic Reprogramming in Arabidopsis

(2010) Mathieu Ingouff et al.   CURRENT BIOLOGY

More from less: plant growth under limited water

(2010) Aleksandra Skirycz et al.   CURRENT OPINION IN BIOTECHNOLOGY

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

Dominant Role for Signal Transduction in the Transcriptional Memory of Yeast GAL Genes

(2010) S. Kundu et al.   MOLECULAR AND CELLULAR BIOLOGY

Transgenerational Inheritance and Resetting of Stress-Induced Loss of Epigenetic Gene Silencing in Arabidopsis

(2010) Christina Lang-Mladek et al.   Molecular Plant

Inducible gene expression: diverse regulatory mechanisms

(2010) Vikki M. Weake et al.   NATURE REVIEWS GENETICS

Epigenetic Regulation of Repetitive Elements Is Attenuated by Prolonged Heat Stress inArabidopsis

(2010) Ales Pecinka et al.   PLANT CELL

Arabidopsis Histone Methyltransferase SET DOMAIN GROUP8 Mediates Induction of the Jasmonate/Ethylene Pathway Genes in Plant Defense Response to Necrotrophic Fungi

(2010) A. Berr et al.   PLANT PHYSIOLOGY

Transgenerational Adaptation of Arabidopsis to Stress Requires DNA Methylation and the Function of Dicer-Like Proteins

(2010) Alex Boyko et al.   PLoS One

Phosphatidylinositol 5-Phosphate Links Dehydration Stress to the Activity of ARABIDOPSIS TRITHORAX-LIKE Factor ATX1

(2010) Ivan Ndamukong et al.   PLoS One

Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation

(2010) H. Nelissen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Roles for H2A.Z and Its Acetylation in GAL1 Transcription and Gene Induction, but Not GAL1-Transcriptional Memory

(2010) Jeffrey E. Halley et al.   PLOS BIOLOGY

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

Evolution and pleiotropy of TRITHORAX function in Arabidopsis

(2009) Zoya Avramova   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

The Beauty of Being a Variant: H2A.Z and the SWR1 Complex in Plants

(2009) Rosana March-Díaz et al.   Molecular Plant

Arabidopsis MSI1 Is Required for Negative Regulation of the Response to Drought Stress

(2009) Cristina Alexandre et al.   Molecular Plant

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

(2009) Rebecca A. Mosher et al.   NATURE

Mitogen-Activated Protein Kinases 3 and 6 Are Required for Full Priming of Stress Responses in Arabidopsis thaliana

(2009) G. J.M. Beckers et al.   PLANT CELL

Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis

(2009) Chang Seob Kwon et al.   PLANT JOURNAL

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

Genome-Wide Demethylation of Arabidopsis Endosperm

(2009) T.-F. Hsieh et al.   SCIENCE

Dynamic and stable histone H3 methylation patterns at the Arabidopsis FLC and AP1 loci

(2008) Abdelaty Saleh et al.   GENE

Developmental and Environmental Signals Induce Distinct Histone Acetylation Profiles on Distal and Proximal Promoter Elements of the C4-Pepc Gene in Maize

(2008) S. Offermann et al.   GENETICS

ARABIDOPSIS TRITHORAX1 Dynamically Regulates FLOWERING LOCUS C Activation via Histone 3 Lysine 4 Trimethylation

(2008) S. Pien et al.   PLANT CELL

Molecular mechanisms underlying plant memory in JA-mediated defence responses

(2008) IVAN GÁLIS et al.   PLANT CELL AND ENVIRONMENT