Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement

Polycomb and Trithorax group protein-mediated control of stress responses in plants

(2014) Julia Anna Kleinmanns et al.   BIOLOGICAL CHEMISTRY

Histone variants: dynamic punctuation in transcription

(2014) C. M. Weber et al.   GENES & DEVELOPMENT

Identification of genes preventing transgenerational transmission of stress-induced epigenetic states

(2014) M. Iwasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A meta-analysis of crop yield under climate change and adaptation

(2014) A. J. Challinor et al.   Nature Climate Change

Natural CMT2 Variation Is Associated With Genome-Wide Methylation Changes and Temperature Seasonality

(2014) Xia Shen et al.   PLoS Genetics

Dynamic regulation and function of histone monoubiquitination in plants

(2014) Jing Feng et al.   Frontiers in Plant Science

Arabidopsis replacement histone variant H3.3 occupies promoters of regulated genes

(2014) Huan Shu et al.   GENOME BIOLOGY

The HIRA complex that deposits the histone H3.3 is conserved in Arabidopsis and facilitates transcriptional dynamics

(2014) X. Nie et al.   Biology Open

Four distinct types of dehydration stress memory genes in Arabidopsis thaliana

(2013) Yong Ding et al.   BMC PLANT BIOLOGY

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Arabidopsis MSI1 connects LHP1 to PRC2 complexes

(2013) Maria Derkacheva et al.   EMBO JOURNAL

Crosstalk between poly(ADP-ribose) polymerase and sirtuin enzymes

(2013) Carles Cantó et al.   MOLECULAR ASPECTS OF MEDICINE

TET enzymes, TDG and the dynamics of DNA demethylation

(2013) Rahul M. Kohli et al.   NATURE

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis

(2013) Hume Stroud et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genome-wide reorganization of histone H2AX toward particular fragile sites on cell activation

(2013) J. Seo et al.   NUCLEIC ACIDS RESEARCH

Dual function of MIPS1 as a metabolic enzyme and transcriptional regulator

(2013) David Latrasse et al.   NUCLEIC ACIDS RESEARCH

STIFDB2: An Updated Version of Plant Stress-Responsive TranscrIption Factor DataBase with Additional Stress Signals, Stress-Responsive Transcription Factor Binding Sites and Stress-Responsive Genes in Arabidopsis and Rice

(2013) Mahantesha Naika et al.   PLANT AND CELL PHYSIOLOGY

Histone Deacetylase Complex1 Expression Level Titrates Plant Growth and Abscisic Acid Sensitivity in Arabidopsis

(2013) G. Perrella et al.   PLANT CELL

BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis

(2013) Rafal Archacki et al.   PLoS One

Genome-Wide Quantitative Identification of DNA Differentially Methylated Sites in Arabidopsis Seedlings Growing at Different Water Potential

(2013) Alejandro C. Colaneri et al.   PLoS One

Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis

(2013) S.-H. Zhong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive Natural Epigenetic Variation at a De Novo Originated Gene

(2013) Amanda Bortolini Silveira et al.   PLoS Genetics

Epigenetic responses to drought stress in rice (Oryza sativa L.)

(2013) Gayacharan et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants

(2012) Jiamu Du et al.   CELL

Metabolic Regulation of Epigenetics

(2012) Chao Lu et al.   Cell Metabolism

On PAR with PARP: cellular stress signaling through poly(ADP-ribose) and PARP-1

(2012) X. Luo et al.   GENES & DEVELOPMENT

Stress-Induced Chromatin Changes: A Critical View on Their Heritability

(2012) A. Pecinka et al.   PLANT AND CELL PHYSIOLOGY

DNA Methylation in Plants: Relationship to Small RNAs and Histone Modifications, and Functions in Transposon Inactivation

(2012) H. Saze et al.   PLANT AND CELL PHYSIOLOGY

Transition of Chromatin Status During the Process of Recovery from Drought Stress in Arabidopsis thaliana

(2012) Jong-Myong Kim et al.   PLANT AND CELL PHYSIOLOGY

The SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Represses Abscisic Acid Responses in the Absence of the Stress Stimulus in Arabidopsis

(2012) S.-K. Han et al.   PLANT CELL

Genome-wide profiling of histone H3K4-tri-methylation and gene expression in rice under drought stress

(2012) Wei Zong et al.   PLANT MOLECULAR BIOLOGY

The Progeny of Arabidopsis thaliana Plants Exposed to Salt Exhibit Changes in DNA Methylation, Histone Modifications and Gene Expression

(2012) Andriy Bilichak et al.   PLoS One

The Dynamic Changes of DNA Methylation and Histone Modifications of Salt Responsive Transcription Factor Genes in Soybean

(2012) Yuguang Song et al.   PLoS One

Dynamic differential methylation facilitates pathogen stress response in Arabidopsis

(2012) X. Zhang   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of stress-related and reactive oxygen species-mediated signals by Topoisomerase VI in Arabidopsis thaliana

(2012) K. Simkova et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana

(2012) H. Stroud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Histone Acetyltransferase Regulates Active DNA Demethylation in Arabidopsis

(2012) W. Qian et al.   SCIENCE

Multiple exposures to drought 'train' transcriptional responses in Arabidopsis

(2012) Yong Ding et al.   Nature Communications

Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome

(2012) Heike Wollmann et al.   PLoS Genetics

Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes

(2012) Devin Coleman-Derr et al.   PLoS Genetics

Plant histone acetylation: In the beginning…

(2011) Jakob H. Waterborg   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Transgenerational epigenetic inheritance in plants

(2011) Marie-Theres Hauser et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Histone variants and chromatin assembly in plant abiotic stress responses

(2011) Yan Zhu et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Precise deposition of histone H2A.Z in chromatin for genome expression and maintenance

(2011) Pierre Billon et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Chromatin modifications and remodeling in plant abiotic stress responses

(2011) Ming Luo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

Regulation of chromatin by histone modifications

(2011) Andrew J Bannister et al.   CELL RESEARCH

Functions of the poly(ADP-ribose) polymerase superfamily in plants

(2011) Rebecca S. Lamb et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

(2011) François Roudier et al.   EMBO JOURNAL

Sirtuins: Molecular Traffic Lights in the Crossroad of Oxidative Stress, Chromatin Remodeling, and Transcription

(2011) Ramkumar Rajendran et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Knockdown of SAMS genes encoding S-adenosyl-l-methionine synthetases causes methylation alterations of DNAs and histones and leads to late flowering in rice

(2011) Wenxuan Li et al.   JOURNAL OF PLANT PHYSIOLOGY

Methionine Adenosyltransferase II Serves as a Transcriptional Corepressor of Maf Oncoprotein

(2011) Yasutake Katoh et al.   MOLECULAR CELL

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Herbivory in the Previous Generation Primes Plants for Enhanced Insect Resistance

(2011) S. Rasmann et al.   PLANT PHYSIOLOGY

Poly(ADP-ribosyl)ation in plants

(2011) Amy G. Briggs et al.   TRENDS IN PLANT SCIENCE

Histone Methylation in Higher Plants

(2010) Chunyan Liu et al.   Annual Review of Plant Biology

HMGB proteins and transcriptional regulation

(2010) Tetsuya Ueda et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

HMGB proteins: Interactions with DNA and chromatin

(2010) Michal Štros   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The effect of 5-azacytidine on wheat seedlings responses to NaCl stress

(2010) L. Zhong et al.   BIOLOGIA PLANTARUM

Chromatin modification acts as a memory for systemic acquired resistance in the plant stress response

(2010) Michal Jaskiewicz et al.   EMBO REPORTS

Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response

(2010) Li-Ting Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Arabidopsis Putative Deacetylase AtSRT2 Regulates Basal Defense by Suppressing PAD4, EDS5 and SID2 Expression

(2010) Chunzheng Wang et al.   PLANT AND CELL PHYSIOLOGY

Cooperation of Multiple Chromatin Modifications Can Generate Unanticipated Stability of Epigenetic States in Arabidopsis

(2010) T. Baubec et al.   PLANT CELL

Epigenetic Regulation of Repetitive Elements Is Attenuated by Prolonged Heat Stress inArabidopsis

(2010) Ales Pecinka et al.   PLANT CELL

A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis

(2010) Wannian Yang et al.   PLANT JOURNAL

Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression

(2010) Junli Zhou et al.   PLANT MOLECULAR BIOLOGY

Histone dynamics and roles of histone acetyltransferases during cold-induced gene regulation in Arabidopsis

(2010) Kanchan Pavangadkar et al.   PLANT MOLECULAR BIOLOGY

Arabidopsis thaliana transcriptional co-activators ADA2b and SGF29a are implicated in salt stress responses

(2010) Athanasios Kaldis et al.   PLANTA

Signaling Kinase AMPK Activates Stress-Promoted Transcription via Histone H2B Phosphorylation

(2010) D. Bungard et al.   SCIENCE

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis

(2009) S. Vinod Kumar et al.   CELL

H2AX: functional roles and potential applications

(2009) Jennifer S. Dickey et al.   CHROMOSOMA

Histone3 variants in plants

(2009) Mathieu Ingouff et al.   CHROMOSOMA

Stability of histone modifications across mammalian genomes: Implications for ‘epigenetic’ marking

(2009) Benjamin M. Lee et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Stress-induced DNA methylation changes and their heritability in asexual dandelions

(2009) Koen J. F. Verhoeven et al.   NEW PHYTOLOGIST

Histone occupancy-dependent and -independent removal of H3K27 trimethylation at cold-responsive genes in Arabidopsis

(2009) Chang Seob Kwon et al.   PLANT JOURNAL

Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield

(2009) M. Hauben et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ATP-Citrate Lyase Links Cellular Metabolism to Histone Acetylation

(2009) K. E. Wellen et al.   SCIENCE

Two Arabidopsis orthologs of the transcriptional coactivator ADA2 have distinct biological functions

(2008) Amy T. Hark et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The Expression Level of the Chromatin-Associated HMGB1 Protein Influences Growth, Stress Tolerance, and Transcriptome in Arabidopsis

(2008) Dorte Launholt Lildballe et al.   JOURNAL OF MOLECULAR BIOLOGY

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense

(2008) K.-C. Kim et al.   PLANT CELL

Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance

(2008) J. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Chromatin Remodeler SPLAYED Regulates Specific Stress Signaling Pathways

(2008) Justin W. Walley et al.   PLoS Pathogens