Rare taxa maintain the stability of crop mycobiomes and ecosystem functions

Abundant fungi adapt to broader environmental gradients than rare fungi in agricultural fields

(2020) Shuo Jiao et al.   GLOBAL CHANGE BIOLOGY

Foliar endophytic fungi alter patterns of nitrogen uptake and distribution in Theobroma cacao

(2019) Natalie Christian et al.   NEW PHYTOLOGIST

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

(2019) Zhi-Bo Zhao et al.   Microbiome

Plant geographic origin and phylogeny as potential drivers of community structure in root-inhabiting fungi

(2019) Akihiro Koyama et al.   JOURNAL OF ECOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

A few Ascomycota taxa dominate soil fungal communities worldwide

(2019) Eleonora Egidi et al.   Nature Communications

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem

(2019) Hui Yao et al.   Microbiome

Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China

(2019) Shuo Jiao et al.   ISME Journal

Rhizobacterium‐derived diacetyl modulates plant immunity in a phosphate‐dependent manner

(2019) Rafael JL Morcillo et al.   EMBO JOURNAL

Eco‐holobiont: A new concept to identify drivers of host‐associated microorganisms

(2019) Brajesh K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY

Rare microbial taxa as the major drivers of ecosystem multifunctionality in long-term fertilized soils

(2019) Qing-Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

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(2018) Manuel Delgado-Baquerizo et al.   ECOLOGY

Field study reveals core plant microbiota and relative importance of their drivers

(2018) Kelly Hamonts et al.   ENVIRONMENTAL MICROBIOLOGY

Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies

(2018) Mari Pent et al.   ENVIRONMENTAL MICROBIOLOGY

Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom

(2018) Yuanyuan Xue et al.   ISME Journal

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity

(2018) Liesje Mommer et al.   NEW PHYTOLOGIST

Potential dual effect of nitrification inhibitor 3,4-dimethylpyrazole phosphate on nitrifier denitrification in the mitigation of peak N 2 O emission events in North China Plain cropping systems

(2018) Di Wu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Dynamic biochar effects on soil nitrous oxide emissions and underlying microbial processes during the maize growing season

(2018) Joseph D. Edwards et al.   SOIL BIOLOGY & BIOCHEMISTRY

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Network hubs in root-associated fungal metacommunities

(2018) Hirokazu Toju et al.   Microbiome

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

(2018) M. A. Cregger et al.   Microbiome

Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival

(2018) Paloma Durán et al.   CELL

Fungal diversity regulates plant-soil feedbacks in temperate grassland

(2018) Marina Semchenko et al.   Science Advances

Rare symbionts may contribute to the resilience of coral–algal assemblages

(2017) Maren Ziegler et al.   ISME Journal

Where less may be more: how the rare biosphere pulls ecosystems strings

(2017) Alexandre Jousset et al.   ISME Journal

Biogeography and ecological diversity patterns of rare and abundant bacteria in oil-contaminated soils

(2017) Shuo Jiao et al.   MOLECULAR ECOLOGY

The evolution of the host microbiome as an ecosystem on a leash

(2017) Kevin R. Foster et al.   NATURE

Root type and soil phosphate determine the taxonomic landscape of colonizing fungi and the transcriptome of field-grown maize roots

(2017) Peng Yu et al.   NEW PHYTOLOGIST

Root-associated fungal microbiota of nonmycorrhizalArabis alpinaand its contribution to plant phosphorus nutrition

(2017) Juliana Almario et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

(2017) Francis M. Martin et al.   SCIENCE

Microbiome and the future for food and nutrient security

(2017) Brajesh K. Singh et al.   Microbial Biotechnology

The Plant Microbiota: Systems-Level Insights and Perspectives

(2016) Daniel B. Müller et al.   Annual Review of Genetics

Microbial and Functional Diversity within the Phyllosphere of Espeletia Species in an Andean High-Mountain Ecosystem

(2016) Carlos A. Ruiz-Pérez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Families of Sordariomycetes

(2016) Sajeewa S. N. Maharachchikumbura et al.   FUNGAL DIVERSITY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals

(2016) Nadine M Boulotte et al.   ISME Journal

Closing yield gaps in China by empowering smallholder farmers

(2016) Weifeng Zhang et al.   NATURE

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Networking in the Plant Microbiome

(2016) Marcel G. A. van der Heijden et al.   PLOS BIOLOGY

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

(2015) Davide Bulgarelli et al.   Cell Host & Microbe

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

Quantifying the relative roles of selective and neutral processes in defining eukaryotic microbial communities

(2015) Peter Morrison-Whittle et al.   ISME Journal

The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China

(2015) Lemian Liu et al.   ISME Journal

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Host genotype is an important determinant of the cereal phyllosphere mycobiome

(2015) Rumakanta Sapkota et al.   NEW PHYTOLOGIST

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Mycorrhizal ecology and evolution: the past, the present, and the future

(2015) Marcel G. A. van der Heijden et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

(2015) Ruibo Sun et al.   SOIL BIOLOGY & BIOCHEMISTRY

Context dependency and saturating effects of loss of rare soil microbes on plant productivity

(2015) W. H. Gera Hol et al.   Frontiers in Plant Science

Microbial genome-enabled insights into plant–microorganism interactions

(2014) David S. Guttman et al.   NATURE REVIEWS GENETICS

Stochasticity, succession, and environmental perturbations in a fluidic ecosystem

(2014) Jizhong Zhou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Families of Dothideomycetes

(2013) Kevin D. Hyde et al.   FUNGAL DIVERSITY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Rare Species Support Vulnerable Functions in High-Diversity Ecosystems

(2013) David Mouillot et al.   PLOS BIOLOGY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Epicoccum nigrum P16, a Sugarcane Endophyte, Produces Antifungal Compounds and Induces Root Growth

(2012) Léia Cecilia de Lima Fávaro et al.   PLoS One

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Reduction of rare soil microbes modifies plant-herbivore interactions

(2010) W. H. Gera Hol et al.   ECOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Role of nutrients in controlling plant diseases in sustainable agriculture. A review

(2008) Christos Dordas   Agronomy for Sustainable Development

Arbuscular mycorrhiza: the mother of plant root endosymbioses

(2008) Martin Parniske   NATURE REVIEWS MICROBIOLOGY