Network hubs in root-associated fungal metacommunities

Root-associated fungal microbiota of nonmycorrhizalArabis alpinaand its contribution to plant phosphorus nutrition

(2017) Juliana Almario et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Deciphering composition and function of the root microbiome of a legume plant

(2017) Kyle Hartman et al.   Microbiome

Species-rich networks and eco-evolutionary synthesis at the metacommunity level

(2017) Hirokazu Toju et al.   Nature Ecology & Evolution

Root Endophyte Colletotrichum tofieldiae Confers Plant Fitness Benefits that Are Phosphate Status Dependent

(2016) Kei Hiruma et al.   CELL

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Network modules and hubs in plant-root fungal biomes

(2016) Hirokazu Toju et al.   Journal of the Royal Society Interface

Ericaceous plant-fungus network in a harsh alpine-subalpine environment

(2016) H. Toju et al.   MOLECULAR ECOLOGY

Sequence variation in nuclear ribosomal small subunit, internal transcribed spacer and large subunit regions ofRhizophagus irregularisandGigaspora margaritais high and isolate-dependent

(2016) Odile Thiéry et al.   MOLECULAR ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Dimensions of biodiversity in the Earth mycobiome

(2016) Kabir G. Peay et al.   NATURE REVIEWS MICROBIOLOGY

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Lack of host specificity leads to independent assortment of dipterocarps and ectomycorrhizal fungi across a soil fertility gradient

(2015) Kabir G. Peay et al.   ECOLOGY LETTERS

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards an integrated phylogenetic classification of the Tremellomycetes

(2015) X.-Z. Liu et al.   STUDIES IN MYCOLOGY

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Below-ground plant-fungus network topology is not congruent with above-ground plant-animal network topology

(2015) H. Toju et al.   Science Advances

Plant growth-promoting traits of epiphytic and endophytic yeasts isolated from rice and sugar cane leaves in Thailand

(2014) Pumin Nutaratat et al.   Fungal Biology

Agricultural uses of plant biostimulants

(2014) Pamela Calvo et al.   PLANT AND SOIL

Sequence Depth, Not PCR Replication, Improves Ecological Inference from Next Generation DNA Sequencing

(2014) Dylan P. Smith et al.   PLoS One

Endemism and functional convergence across the North American soil mycobiome

(2014) J. M. Talbot et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological and evolutionary effects of fragmentation on infectious disease dynamics

(2014) J. Jousimo et al.   SCIENCE

Global diversity and geography of soil fungi

(2014) L. Tedersoo et al.   SCIENCE

Assembly of complex plant–fungus networks

(2014) Hirokazu Toju et al.   Nature Communications

Isolation and biological activities of an endophytic Mortierella alpina strain from the Antarctic moss Schistidium antarctici

(2013) Itamar S. Melo et al.   EXTREMOPHILES

The cultivable endophytic community of Norway spruce ectomycorrhizas from microhabitats lacking ericaceous hosts is dominated by ericoid mycorrhizal Meliniomyces variabilis

(2013) Martin Vohník et al.   Fungal Ecology

Network perspectives of ectomycorrhizal associations

(2013) Mohammad Bahram et al.   Fungal Ecology

Elicitors from the endophytic fungus Trichoderma atroviride promote Salvia miltiorrhiza hairy root growth and tanshinone biosynthesis

(2013) Qianliang Ming et al.   JOURNAL OF EXPERIMENTAL BOTANY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Co-infection by Botryosphaeriaceae andIlyonectriaspp. fungi during propagation causes decline of young grafted grapevines

(2013) M. A. Whitelaw-Weckert et al.   PLANT PATHOLOGY

Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages

(2013) Alison Elizabeth Bennett et al.   PLoS One

Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

(2013) Akifumi S. Tanabe et al.   PLoS One

Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules

(2012) KABIR G. PEAY et al.   MOLECULAR ECOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

On the application of network theory to arbuscular mycorrhizal fungi-plant interactions: the importance of basic assumptions

(2012) Tancredi Caruso et al.   NEW PHYTOLOGIST

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Hidden Fungi, Emergent Properties: Endophytes and Microbiomes

(2011) Andrea Porras-Alfaro et al.   Annual Review of Phytopathology

Interactions between arbuscular mycorrhizal fungi and phosphate-solubilizing fungus (Mortierella sp.) and their effects on Kostelelzkya virginica growth and enzyme activities of rhizosphere and bulk soils at different salinities

(2011) Huanshi Zhang et al.   BIOLOGY AND FERTILITY OF SOILS

The Co-occurrence and Morphological Continuum Between Ericoid Mycorrhiza and Dark Septate Endophytes in Roots of Six European Rhododendron Species

(2011) Martin Vohník et al.   FOLIA GEOBOTANICA

First Report of Root Rot Caused by Ilyonectria (=Neonectria) macrodidyma on Avocado (Persea americana) in Italy

(2011) Alessandro Vitale et al.   JOURNAL OF PHYTOPATHOLOGY

A meta-analysis of plant responses to dark septate root endophytes

(2011) K. K. Newsham   NEW PHYTOLOGIST

Using null models to disentangle variation in community dissimilarity from variation in α-diversity

(2011) Jonathan M. Chase et al.   Ecosphere

Synchrony and Stability of Food Webs in Metacommunities

(2010) Tarik C. Gouhier et al.   AMERICAN NATURALIST

Molecular Characterization of Coprophilous Fungal Communities Reveals Sequences Related to Root-Associated Fungal Endophytes

(2010) José Herrera et al.   MICROBIAL ECOLOGY

EndophyticTrichodermaIsolates from Tropical Environments Delay Disease Onset and Induce Resistance AgainstPhytophthora capsiciin Hot Pepper Using Multiple Mechanisms

(2010) Hanhong Bae et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

Ascomycetes associated with ectomycorrhizas: molecular diversity and ecology with particular reference to theHelotiales

(2009) Leho Tedersoo et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of endophytic yeasts from sweet orange and their localization by scanning electron microscopy

(2009) Cláudia Santos Gai et al.   JOURNAL OF BASIC MICROBIOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Acquisition of phosphorus and nitrogen in the rhizosphere and plant growth promotion by microorganisms

(2009) Alan E. Richardson et al.   PLANT AND SOIL

Antibiosis, mycoparasitism, and colonization success for endophytic Trichoderma isolates with biological control potential in Theobroma cacao

(2008) B.A. Bailey et al.   BIOLOGICAL CONTROL

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Evidence of Symbiosis Between the Soil Yeast Cryptococcus laurentii and a Sclerophyllous Medicinal Shrub, Agathosma betulina (Berg.) Pillans

(2008) Karen J. Cloete et al.   MICROBIAL ECOLOGY