Parallel analysis of miRNAs and mRNAs suggests distinct regulatory networks in Crassostrea gigas infected by Ostreid herpesvirus 1

Variability in the Composition of Pacific Oyster Microbiomes Across Oyster Families Exhibiting Different Levels of Susceptibility to OsHV-1 μvar Disease

(2019) William L. King et al.   Frontiers in Microbiology

A Needle in A Haystack: Tracing Bivalve-Associated Viruses in High-Throughput Transcriptomic Data

(2019) Umberto Rosani et al.   Viruses-Basel

Dual Transcriptomic Analysis Reveals a Delayed Antiviral Response of Haliotis diversicolor supertexta against Haliotid Herpesvirus-1

(2019) Bai et al.   Viruses-Basel

A-to-I editing of Malacoherpesviridae RNAs supports the antiviral role of ADAR1 in mollusks

(2019) Umberto Rosani et al.   BMC EVOLUTIONARY BIOLOGY

Investigating the natural resistance of blackfoot p-a%%KERN_ERR%%ua Haliotis iris to abalone viral ganglioneuritis using whole transcriptome analysis

(2019) MJ Neave et al.   DISEASES OF AQUATIC ORGANISMS

Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves

(2019) Victor Golyaev et al.   Scientific Reports

A novel Laccase gene from Litopenaeus vannamei is involved in the immune responses to pathogen infection and oxidative stress

(2019) Yi-Hong Chen et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Metazoan MicroRNAs

(2018) David P. Bartel   CELL

Well-Annotated microRNAomes Do Not Evidence Pervasive miRNA Loss

(2018) James E Tarver et al.   Genome Biology and Evolution

Identification of a newly described OsHV-1 µvar from the North Adriatic Sea (Italy)

(2018) Miriam Abbadi et al.   JOURNAL OF GENERAL VIROLOGY

Capturing the ‘ome’: the expanding molecular toolbox for RNA and DNA library construction

(2018) Morgane Boone et al.   NUCLEIC ACIDS RESEARCH

Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data

(2018) Michael J. Axtell et al.   PLANT CELL

Tracking the global footprint of fisheries

(2018) David A. Kroodsma et al.   SCIENCE

Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “ Megavirales ”

(2018) Arcady Mushegian et al.   VIROLOGY

Editorial focus: entering into the non-coding RNA era

(2018) Rafal Bartoszewski et al.   CELLULAR & MOLECULAR BIOLOGY LETTERS

Dual transcriptomic analysis of Ostreid herpesvirus 1 infected Scapharca broughtonii with an emphasis on viral anti-apoptosis activities and host oxidative bursts

(2018) Chang-Ming Bai et al.   FISH & SHELLFISH IMMUNOLOGY

Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes

(2018) Fergal M. Waldron et al.   PLoS Genetics

White Spot Syndrome Virus-Induced Shrimp miR-315 Attenuates Prophenoloxidase Activation via PPAE3 Gene Suppression

(2018) Phattarunda Jaree et al.   Frontiers in Immunology

Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters

(2018) Julien de Lorgeril et al.   Nature Communications

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

A norepinephrine-responsive miRNA directly promotes CgHSP90AA1 expression in oyster haemocytes during desiccation

(2017) Hao Chen et al.   FISH & SHELLFISH IMMUNOLOGY

Viruses infecting marine molluscs

(2017) Isabelle Arzul et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Haemocytes from Crassostrea gigas and OsHV-1: A promising in vitro system to study host/virus interactions

(2017) Benjamin Morga et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

(2017) Ioanna Kalvari et al.   NUCLEIC ACIDS RESEARCH

PmRunt regulated by Pm-miR-183 participates in nacre formation possibly through promoting the expression of collagen VI-like and Nacrein in pearl oyster Pinctada martensii

(2017) Zhe Zheng et al.   PLoS One

Roles of LncRNAs in Viral Infections

(2017) Weiwei Liu et al.   Frontiers in Cellular and Infection Microbiology

Oyster RNA-seq Data Support the Development of Malacoherpesviridae Genomics

(2017) Umberto Rosani et al.   Frontiers in Microbiology

Shrimp miR-12 Suppresses White Spot Syndrome Virus Infection by Synchronously Triggering Antiviral Phagocytosis and Apoptosis Pathways

(2017) Le Shu et al.   Frontiers in Immunology

Shrimp miRNAs regulate innate immune response against white spot syndrome virus infection

(2016) Napol Kaewkascholkul et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Identification and characterization of ostreid herpesvirus 1 associated with massive mortalities of Scapharca broughtonii broodstocks in China

(2016) C Bai et al.   DISEASES OF AQUATIC ORGANISMS

Australian abalone (Haliotis laevigata, H. rubra and H. conicopora) are susceptible to infection by multiple abalone herpesvirus genotypes

(2016) S Corbeil et al.   DISEASES OF AQUATIC ORGANISMS

Detection and distribution of ostreid herpesvirus 1 in experimentally infected Pacific oyster spat

(2016) Amélie Segarra et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Infectious diseases in oyster aquaculture require a new integrated approach

(2016) Fabrice Pernet et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Experimental infection of European flat oyster Ostrea edulis with ostreid herpesvirus 1 microvar (OsHV-1μvar): Mortality, viral load and detection of viral transcripts by in situ hybridization

(2016) Monserrat López Sanmartín et al.   VIRUS RESEARCH

An invertebrate-specific miRNA targeted the ancient cholinergic neuroendocrine system of oyster

(2016) Hao Chen et al.   Open Biology

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome

(2015) Bastian Fromm et al.   Annual Review of Genetics

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

miR-29a Participated in Nacre Formation and Immune Response by Targeting Y2R in Pinctada martensii

(2015) Rongrong Tian et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Antiviral immunity in marine molluscs

(2015) Timothy J. Green et al.   JOURNAL OF GENERAL VIROLOGY

Mass mortality in bivalves and the intricate case of the Pacific oyster, Crassostrea gigas

(2015) Valérie Barbosa Solomieu et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

A white spot syndrome virus microRNA promotes the virus infection by targeting the host STAT

(2015) Qian Ren et al.   Scientific Reports

RNA editing of microRNA prevents RNA-induced silencing complex recognition of target mRNA

(2015) Yalei Cui et al.   Open Biology

Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1-positiveCrassostrea gigas

(2014) U. Rosani et al.   ENVIRONMENTAL MICROBIOLOGY

Mortality occurrence and pathogen detection in Crassostrea gigas and Mytilus galloprovincialis close-growing in shallow waters (Goro lagoon, Italy)

(2014) Stefania Domeneghetti et al.   FISH & SHELLFISH IMMUNOLOGY

Bioinformatics analysis of hemocyte miRNAs of scallop Chlamys farreri against acute viral necrobiotic virus (AVNV)

(2014) Guofu Chen et al.   FISH & SHELLFISH IMMUNOLOGY

The Identification and Characteristics of Immune-Related MicroRNAs in Haemocytes of Oyster Crassostrea gigas

(2014) Zhi Zhou et al.   PLoS One

Identification and Comparative Analysis of the Tegillarca granosa Haemocytes MicroRNA Transcriptome in Response to Cd Using a Deep Sequencing Approach

(2014) Yongbo Bao et al.   PLoS One

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Molluscan cells in culture: primary cell cultures and cell lines

(2013) T.P. Yoshino et al.   CANADIAN JOURNAL OF ZOOLOGY

Validation of housekeeping genes as internal controls for studying gene expression during Pacific oyster (Crassostrea gigas) development by quantitative real-time PCR

(2013) Yishuai Du et al.   FISH & SHELLFISH IMMUNOLOGY

Global Bidirectional Transcription of the Epstein-Barr Virus Genome during Reactivation

(2013) T. O'Grady et al.   JOURNAL OF VIROLOGY

Identification and Characterization of MicroRNAs in Pearl Oyster Pinctada martensii by Solexa Deep Sequencing

(2013) Yu Jiao et al.   MARINE BIOTECHNOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

A model based criterion for gene expression calls using RNA-seq data

(2013) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

MicroRNAs

(2013) M. Bhaskaran et al.   VETERINARY PATHOLOGY

Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri

(2013) Weicheng Ren et al.   Virology Journal

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Comprehensive characterization of viral miRNAs involved in white spot syndrome virus (WSSV) infection

(2012) Yaodong He et al.   RNA Biology

Suppression substractive hybridisation (SSH) and real time PCR reveal differential gene expression in the Pacific cupped oyster, Crassostrea gigas, challenged with Ostreid herpesvirus 1

(2011) T. Renault et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Variations of enzyme activities in the haemocytes of scallop Chlamys farreri after infection with the acute virus necrobiotic virus (AVNV)

(2008) Jing Xing et al.   FISH & SHELLFISH IMMUNOLOGY

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH