Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves
Authors
Keywords
-
Journal
Scientific Reports
Volume 9, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-12-17
DOI
10.1038/s41598-019-55547-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- ICTV Virus Taxonomy Profile: Endornaviridae
- (2019) Rodrigo A. Valverde et al. JOURNAL OF GENERAL VIROLOGY
- Small RNA-Omics for Virome Reconstruction and Antiviral Defense Characterization in Mixed Infections of Cultivated Solanum Plants
- (2018) Silvia Turco et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Revisiting the Roles of Tobamovirus Replicase Complex Proteins in Viral Replication and Silencing Suppression
- (2018) Nachelli Malpica-López et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Identification, characterization and full-length sequence analysis of a novel endornavirus in common sunflower (Helianthus annuus L.)
- (2018) Wen-wen LIU et al. Journal of Integrative Agriculture
- Identification of virus-derived siRNAs and their targets in RBSDV-infected rice by deep sequencing
- (2017) Ying Lan et al. JOURNAL OF BASIC MICROBIOLOGY
- Drought responsive microRNAs in two barley cultivars differing in their level of sensitivity to drought stress
- (2017) Ehsan Mohseni Fard et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Classical and next generation sequencing approaches unravel Bymovirus diversity in barley crops in France
- (2017) Mathieu Rolland et al. PLoS One
- Characteristics of siRNAs derived from Southern rice black-streaked dwarf virus in infected rice and their potential role in host gene regulation
- (2017) Donglin Xu et al. Virology Journal
- Characterization of small interfering RNAs derived from Rice black streaked dwarf virus in infected maize plants by deep sequencing
- (2017) Mingjun Li et al. VIRUS RESEARCH
- Differential Characteristics of Viral siRNAs between Leaves and Roots of Wheat Plants Naturally Infected with Wheat Yellow Mosaic Virus, a Soil-Borne Virus
- (2017) Linying Li et al. Frontiers in Microbiology
- Identification, Characterization and Full-Length Sequence Analysis of a Novel Polerovirus Associated with Wheat Leaf Yellowing Disease
- (2017) Peipei Zhang et al. Frontiers in Microbiology
- Rice Stripe Mosaic Virus, a Novel Cytorhabdovirus Infecting Rice via Leafhopper Transmission
- (2017) Xin Yang et al. Frontiers in Microbiology
- Mal de Río Cuarto Virus Infection Triggers the Production of Distinctive Viral-Derived siRNA Profiles in Wheat and Its Planthopper Vector
- (2017) Luis A. de Haro et al. Frontiers in Plant Science
- Characterisation of siRNAs derived from new isolates of bamboo mosaic virus and their associated satellites in infected ma bamboo (Dendrocalamus latiflorus)
- (2016) Wenwu Lin et al. ARCHIVES OF VIROLOGY
- Generation of different sizes and classes of small RNAs in barley is locus, chromosome and/or cultivar-dependent
- (2016) Michael Hackenberg et al. BMC GENOMICS
- MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies
- (2016) Jonathan Seguin et al. JOURNAL OF VIROLOGICAL METHODS
- Characterization of a Novel Polerovirus Infecting Maize in China
- (2016) Sha Chen et al. Viruses-Basel
- Synergistic infection of two viruses MCMV and SCMV increases the accumulations of both MCMV and MCMV-derived siRNAs in maize
- (2016) Zihao Xia et al. Scientific Reports
- Complete genomic sequence of barley (Hordeum vulgare) endornavirus (HvEV) determined by next-generation sequencing
- (2015) Thierry Candresse et al. ARCHIVES OF VIROLOGY
- Antiviral roles of plant ARGONAUTES
- (2015) Alberto Carbonell et al. CURRENT OPINION IN PLANT BIOLOGY
- History and Diversity of Citrus leprosis virus Recorded in Herbarium Specimens
- (2015) John S. Hartung et al. PHYTOPATHOLOGY
- Characterization of the complete genome of Barley yellow striate mosaic virus reveals a nested gene encoding a small hydrophobic protein
- (2015) Teng Yan et al. VIROLOGY
- Identification and characterization of a maize-associated mastrevirus in China by deep sequencing small RNA populations
- (2015) Sha Chen et al. Virology Journal
- OsRDR6 plays role in host defense against double-stranded RNA virus, Rice Dwarf Phytoreovirus
- (2015) Wei Hong et al. Scientific Reports
- RNA isolation from loquat and other recalcitrant woody plants with high quality and yield
- (2014) Jaime Morante-Carriel et al. ANALYTICAL BIOCHEMISTRY
- Analysis of small RNAs derived from Chinese wheat mosaic virus
- (2014) Jian Yang et al. ARCHIVES OF VIROLOGY
- Interactions of Rice Tungro Bacilliform Pararetrovirus and Its Protein P4 with Plant RNA-Silencing Machinery
- (2014) Rajendran Rajeswaran et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs
- (2014) Jonathan Seguin et al. PLoS One
- Characterization of Small Interfering RNAs Derived from Sugarcane Mosaic Virus in Infected Maize Plants by Deep Sequencing
- (2014) Zihao Xia et al. PLoS One
- Appearances Can Be Deceptive: Revealing a Hidden Viral Infection with Deep Sequencing in a Plant Quarantine Context
- (2014) Thierry Candresse et al. PLoS One
- Dynamics of Small RNA Profiles of Virus and Host Origin in Wheat Cultivars Synergistically Infected by Wheat Streak Mosaic Virus and Triticum Mosaic Virus: Virus Infection Caused a Drastic Shift in the Endogenous Small RNA Profile
- (2014) Satyanarayana Tatineni et al. PLoS One
- A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus
- (2014) Oliver Smith et al. Scientific Reports
- Durable field resistance to wheat yellow mosaic virus in transgenic wheat containing the antisense virus polymerase gene
- (2013) Ming Chen et al. PLANT BIOTECHNOLOGY JOURNAL
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Population Diversity of Rice Stripe Virus-Derived siRNAs in Three Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax striatellus
- (2012) Yi Xu et al. PLoS One
- RNA-dependent RNA polymerase 6 of rice (Oryza sativa) plays role in host defense against negative-strand RNA virus, Rice stripe virus
- (2011) Lin Jiang et al. VIRUS RESEARCH
- Characterization of siRNAs derived from rice stripe virus in infected rice plants by deep sequencing
- (2010) Fei Yan et al. ARCHIVES OF VIROLOGY
- Nucleotide bias of DCL and AGO in plant anti-virus gene silencing
- (2010) Thien Ho et al. Protein & Cell
- Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses
- (2009) Jan F. Kreuze et al. VIROLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now