A-to-I editing of Malacoherpesviridae RNAs supports the antiviral role of ADAR1 in mollusks

Illuminating spatial A-to-I RNA editing signatures within the Drosophila brain

(2019) Anne L. Sapiro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNA-seq of HaHV-1-infected abalones reveals a common transcriptional signature of Malacoherpesviruses

(2019) Chang-Ming Bai et al.   Scientific Reports

A Needle in A Haystack: Tracing Bivalve-Associated Viruses in High-Throughput Transcriptomic Data

(2019) Umberto Rosani et al.   Viruses-Basel

Dual Transcriptomic Analysis Reveals a Delayed Antiviral Response of Haliotis diversicolor supertexta against Haliotid Herpesvirus-1

(2019) Bai et al.   Viruses-Basel

The cytidine deaminase under-representation reporter (CDUR) as a tool to study evolution of sequences under deaminase mutational pressure

(2018) Maxwell Shapiro et al.   BMC BIOINFORMATICS

A comprehensive study on cellular RNA editing activity in response to infections with different subtypes of influenza a viruses

(2018) Yingying Cao et al.   BMC GENOMICS

All I's on the RADAR: role of ADAR in gene regulation

(2018) Galina Shevchenko et al.   FEBS LETTERS

Differential lncRNA expression profiles reveal the potential roles of lncRNAs in antiviral immune response of Crassostrea gigas

(2018) Weiming Sun et al.   FISH & SHELLFISH IMMUNOLOGY

Identification of a newly described OsHV-1 µvar from the North Adriatic Sea (Italy)

(2018) Miriam Abbadi et al.   JOURNAL OF GENERAL VIROLOGY

Emergency Services of Viral RNAs: Repair and Remodeling

(2018) Vadim I. Agol et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Diversification of AID/APOBEC-like deaminases in metazoa: multiplicity of clades and widespread roles in immunity

(2018) Arunkumar Krishnan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to “ Megavirales ”

(2018) Arcady Mushegian et al.   VIROLOGY

Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer

(2018) Valerian V. Dolja et al.   VIRUS RESEARCH

Antiviral Defense and Innate Immune Memory in the Oyster

(2018) Timothy Green et al.   Viruses-Basel

Defense Mechanisms against Viral Infection in Drosophila: RNAi and Non-RNAi

(2018) Luc Swevers et al.   Viruses-Basel

Unexpected invasion of miniature inverted-repeat transposable elements in viral genomes

(2018) Hua-Hao Zhang et al.   Mobile DNA

Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes

(2018) Fergal M. Waldron et al.   PLoS Genetics

Immune-suppression by OsHV-1 viral infection causes fatal bacteraemia in Pacific oysters

(2018) Julien de Lorgeril et al.   Nature Communications

An Evolutionary Landscape of A-to-I RNA Editome across Metazoan Species

(2017) Li-Yuan Hung et al.   Genome Biology and Evolution

Long dsRNAs promote an anti-viral response in Pacific oyster hampering ostreid herpesvirus 1 replication

(2017) Marianna Pauletto et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Haemocytes from Crassostrea gigas and OsHV-1: A promising in vitro system to study host/virus interactions

(2017) Benjamin Morga et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Impacts of Genome-Wide Analyses on Our Understanding of Human Herpesvirus Diversity and Evolution

(2017) Daniel W. Renner et al.   JOURNAL OF VIROLOGY

Linkage of A-to-I RNA Editing in Metazoans and the Impact on Genome Evolution

(2017) Yuange Duan et al.   MOLECULAR BIOLOGY AND EVOLUTION

A-to-I RNA Editing in the Earliest-Diverging Eumetazoan Phyla

(2017) Hagit T. Porath et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNase III nucleases from diverse kingdoms serve as antiviral effectors

(2017) Lauren C. Aguado et al.   NATURE

Haemocytes collected from experimentally infected Pacific oysters, Crassostrea gigas: Detection of ostreid herpesvirus 1 DNA, RNA, and proteins in relation with inhibition of apoptosis

(2017) Claire Martenot et al.   PLoS One

Mechanisms and Factors That Drive Extensive Human Immunodeficiency Virus Type-1 Hypervariability: An Overview

(2017) Mahmoud Mohammad Yaseen et al.   VIRAL IMMUNOLOGY

Complete genome sequence of Ostreid herpesvirus type 1 µVar isolated during mortality events in the Pacific oyster Crassostrea gigas in France and Ireland

(2017) E.A.V. Burioli et al.   VIROLOGY

A bioinformatics approach reveals seven nearly-complete RNA-virus genomes in bivalve RNA-seq data

(2017) Umberto Rosani et al.   VIRUS RESEARCH

Viral reverse transcriptases

(2017) Luis Menéndez-Arias et al.   VIRUS RESEARCH

RNA editing by the host ADAR system affects the molecular evolution of the Zika virus

(2017) Helen Piontkivska et al.   Ecology and Evolution

Development of a Medium Density Combined-Species SNP Array for Pacific and European Oysters ( Crassostrea gigas and Ostrea edulis )

(2017) Alejandro P. Gutierrez et al.   G3-Genes Genomes Genetics

The preferred nucleotide contexts of the AID/APOBEC cytidine deaminases have differential effects when mutating retrotransposon and virus sequences compared to host genes

(2017) Jeffrey Chen et al.   PLoS Computational Biology

Resolving host–pathogen interactions by dual RNA-seq

(2017) Alexander J. Westermann et al.   PLoS Pathogens

Oyster RNA-seq Data Support the Development of Malacoherpesviridae Genomics

(2017) Umberto Rosani et al.   Frontiers in Microbiology

The pearl oyster Pinctada fucata martensii genome and multi-omic analyses provide insights into biomineralization

(2017) Xiaodong Du et al.   GigaScience

Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian heads

(2017) Yi-Jyun Luo et al.   Nature Ecology & Evolution

Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes

(2017) Jin Sun et al.   Nature Ecology & Evolution

Scallop genome provides insights into evolution of bilaterian karyotype and development

(2017) Shi Wang et al.   Nature Ecology & Evolution

RNA editing by ADAR1 regulates innate and antiviral immune functions in primary macrophages

(2017) Maria Pujantell et al.   Scientific Reports

The Evolution of Antiviral Defense Systems

(2016) Benjamin R. tenOever   Cell Host & Microbe

Mechanisms of viral mutation

(2016) Rafael Sanjuán et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Role of Host-Driven Mutagenesis in Determining Genome Evolution of Sigma Virus (DMelSV; Rhabdoviridae) inDrosophila melanogaster

(2016) Helen Piontkivska et al.   Genome Biology and Evolution

Human norovirus hyper-mutation revealed by ultra-deep sequencing

(2016) José M. Cuevas et al.   INFECTION GENETICS AND EVOLUTION

Hyperediting by ADAR1 of a new herpesvirus lncRNA during the lytic phase of the oncogenic Marek’s disease virus

(2016) Thomas Figueroa et al.   JOURNAL OF GENERAL VIROLOGY

Redefining the invertebrate RNA virosphere

(2016) Mang Shi et al.   NATURE

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity

(2016) Melissa M Matthews et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A First Insight into the Genome of the Filter-Feeder Mussel Mytilus galloprovincialis

(2016) Maria Murgarella et al.   PLoS One

The RNA-editing deaminase ADAR is involved in stress resistance of Artemia diapause embryos

(2016) Li Dai et al.   STRESS-THE INTERNATIONAL JOURNAL ON THE BIOLOGY OF STRESS

Structures of human ADAR2 bound to dsRNA reveal base-flipping mechanism and basis for site selectivity

(2016) Melissa M Matthews et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Autophagy plays an important role in protecting Pacific oysters from OsHV-1 andVibrio aestuarianusinfections

(2015) Pierrick Moreau et al.   Autophagy

The origin of the ADAR gene family and animal RNA editing

(2015) Laura F Grice et al.   BMC EVOLUTIONARY BIOLOGY

Nucleic acid-induced antiviral immunity in invertebrates: An evolutionary perspective

(2015) Pei-Hui Wang et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

OsHV-1 countermeasures to the Pacific oyster's anti-viral response

(2015) Timothy J. Green et al.   FISH & SHELLFISH IMMUNOLOGY

An updated molecular basis for mussel immunity

(2015) Marco Gerdol et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome analysis reveals strong and complex antiviral response in a mollusc

(2015) Yan He et al.   FISH & SHELLFISH IMMUNOLOGY

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Complete genome sequence of Ostreid herpesvirus-1 associated with mortalities of Scapharca broughtonii broodstocks

(2015) Junyang Xia et al.   Virology Journal

Hepatitis A and E Viruses in Wastewaters, in River Waters, and in Bivalve Molluscs in Italy

(2015) M. Iaconelli et al.   Food and Environmental Virology

Editorial overview: Antiviral strategies

(2015) Michael Gale et al.   Current Opinion in Virology

RNA editing of microRNA prevents RNA-induced silencing complex recognition of target mRNA

(2015) Yalei Cui et al.   Open Biology

Oysters as hot spots for mimivirus isolation

(2014) Kétyllen R. Andrade et al.   ARCHIVES OF VIROLOGY

Dual transcriptomics of virus-host interactions: comparing two Pacific oyster families presenting contrasted susceptibility to ostreid herpesvirus 1

(2014) Amélie Segarra et al.   BMC GENOMICS

Dual analysis of host and pathogen transcriptomes in ostreid herpesvirus 1-positiveCrassostrea gigas

(2014) U. Rosani et al.   ENVIRONMENTAL MICROBIOLOGY

The first invertebrate RIG-I-like receptor (RLR) homolog gene in the pacific oyster Crassostrea gigas

(2014) Yang Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Circulating type 1 vaccine-derived poliovirus may evolve under the pressure of adenosine deaminases acting on RNA

(2014) Yanhan Liu et al.   Journal of Maternal-Fetal & Neonatal Medicine

A bimodular nuclear localization signal assembled via an extended double-stranded RNA-binding domain acts as an RNA-sensing signal for transportin 1

(2014) P. Barraud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A genome-wide map of hyper-edited RNA reveals numerous new sites

(2014) Hagit T. Porath et al.   Nature Communications

The genetics of host–virus coevolution in invertebrates

(2014) Darren J Obbard et al.   Current Opinion in Virology

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

A model based criterion for gene expression calls using RNA-seq data

(2013) Günter P. Wagner et al.   THEORY IN BIOSCIENCES

Complete genome sequence of acute viral necrosis virus associated with massive mortality outbreaks in the Chinese scallop, Chlamys farreri

(2013) Weicheng Ren et al.   Virology Journal

A virocentric perspective on the evolution of life

(2013) Eugene V Koonin et al.   Current Opinion in Virology

RNA editing in the human ENCODE RNA-seq data

(2012) E. Park et al.   GENOME RESEARCH

Stable expression of Y-box protein 1 gene in early development of the abalone Haliotis diversicolor

(2012) Jun Chen et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Analysis of Clinical Ostreid Herpesvirus 1 (Malacoherpesviridae) Specimens by Sequencing Amplified Fragments from Three Virus Genome Areas

(2012) T. Renault et al.   JOURNAL OF VIROLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Alternate rRNA secondary structures as regulators of translation

(2011) Shu Feng et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Adenosine deaminases acting on RNA (ADARs) are both antiviral and proviral

(2011) Charles E. Samuel   VIROLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Crystal structure of a junction between two Z-DNA helices

(2010) M. de Rosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A neurotropic herpesvirus infecting the gastropod, abalone, shares ancestry with oyster herpesvirus and a herpesvirus associated with the amphioxus genome

(2010) Keith W Savin et al.   Virology Journal

Evidence for ADAR-induced hypermutation of the Drosophila sigma virus (Rhabdoviridae)

(2009) Jennifer A Carpenter et al.   BMC GENETICS

Origins and evolution of ADAR-mediated RNA editing

(2009) Yongfeng Jin et al.   IUBMB LIFE

Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR1 stimulates viral infection

(2009) Margherita Doria et al.   NUCLEIC ACIDS RESEARCH

The order Herpesvirales

(2008) Andrew J. Davison et al.   ARCHIVES OF VIROLOGY

Powerful mutators lurking in the genome

(2008) V. Petit et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES