Untargeted LC-MS Metabolomics Differentiates Between Virulent and Avirulent Clinical Strains of Pseudomonas aeruginosa

Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics

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Mass spectrometry searches using MASST

(2020) Mingxun Wang et al.   NATURE BIOTECHNOLOGY

Parallel evolutionary paths to produce more than one Pseudomonas aeruginosa biofilm phenotype

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Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome

(2019) Robert A. Quinn et al.   Microbiome

Establishment of an induced memory response in Pseudomonas aeruginosa during infection of a eukaryotic host

(2019) Adrian Kordes et al.   ISME Journal

The Core Proteome of Biofilm-Grown Clinical Pseudomonas aeruginosa Isolates

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MetaboLights: a resource evolving in response to the needs of its scientific community

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The Alkylquinolone Repertoire of Pseudomonas aeruginosa is Linked to Structural Flexibility of the FabH-like 2-Heptyl-3-hydroxy-4(1H )-quinolone (PQS) Biosynthesis Enzyme PqsBC

(2018) Florian Witzgall et al.   CHEMBIOCHEM

Metabolomics activity screening for identifying metabolites that modulate phenotype

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Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites

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OUP accepted manuscript

(2018)   NUCLEIC ACIDS RESEARCH

Metabolic Phenotyping and Strain Characterisation of Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients Using Rapid Evaporative Ionisation Mass Spectrometry

(2018) Emmanuelle E. Bardin et al.   Scientific Reports

Unveiling the early events of Pseudomonas aeruginosa adaptation in cystic fibrosis airway environment using a long-term in vitro maintenance

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Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics

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Clustering of MS 2 spectra using unsupervised methods to aid the identification of secondary metabolites from Pseudomonas aeruginosa

(2017) Tobias Depke et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

In-depth Profiling of MvfR-Regulated Small Molecules in Pseudomonas aeruginosa after Quorum Sensing Inhibitor Treatment

(2017) Giuseppe Allegretta et al.   Frontiers in Microbiology

Chemometric methods in data processing of mass spectrometry-based metabolomics: A review

(2016) Lunzhao Yi et al.   ANALYTICA CHIMICA ACTA

Pseudomonas aeruginosainfection in cystic fibrosis: pathophysiological mechanisms and therapeutic approaches

(2016) Helena Lund-Palau et al.   Expert Review of Respiratory Medicine

Global metabolic analyses identify key differences in metabolite levels between polymyxin-susceptible and polymyxin-resistant Acinetobacter baumannii

(2016) Mohd Hafidz Mahamad Maifiah et al.   Scientific Reports

Avoiding Misannotation of In-Source Fragmentation Products as Cellular Metabolites in Liquid Chromatography–Mass Spectrometry-Based Metabolomics

(2015) Yi-Fan Xu et al.   ANALYTICAL CHEMISTRY

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome

(2015) Robert A Quinn et al.   ISME Journal

Quorum Sensing Is Accompanied by Global Metabolic Changes in the Opportunistic Human Pathogen Pseudomonas aeruginosa

(2015) Peter W. Davenport et al.   JOURNAL OF BACTERIOLOGY

Diversity of metabolic profiles of cystic fibrosis Pseudomonas aeruginosa during the early stages of lung infection

(2015) Karin Meinike Jørgensen et al.   MICROBIOLOGY-SGM

Mass-spectrometry-based microbial metabolomics: recent developments and applications

(2014) Peng Gao et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Credentialing Features: A Platform to Benchmark and Optimize Untargeted Metabolomic Methods

(2014) Nathaniel Guy Mahieu et al.   ANALYTICAL CHEMISTRY

Pseudomonas aeruginosa clinical and environmental isolates constitute a single population with high phenotypic diversity

(2014) María-Victoria Grosso-Becerra et al.   BMC GENOMICS

Interclonal gradient of virulence in thePseudomonas aeruginosapangenome from disease and environment

(2014) Rolf Hilker et al.   ENVIRONMENTAL MICROBIOLOGY

Random Forest in Clinical Metabolomics for Phenotypic Discrimination and Biomarker Selection

(2013) Tianlu Chen et al.   Evidence-based Complementary and Alternative Medicine

Pseudomonas aeruginosa adapts its iron uptake strategies in function of the type of infections

(2013) Pierre Cornelis et al.   Frontiers in Cellular and Infection Microbiology

XCMS Online: A Web-Based Platform to Process Untargeted Metabolomic Data

(2012) Ralf Tautenhahn et al.   ANALYTICAL CHEMISTRY

Intraclonal diversity of thePseudomonas aeruginosacystic fibrosis airway isolates TBCF10839 and TBCF121838: distinct signatures of transcriptome, proteome, metabolome, adherence and pathogenicity despite an almost identical genome sequence

(2012) Jens Klockgether et al.   ENVIRONMENTAL MICROBIOLOGY

Ex vivotranscriptional profiling reveals a common set of genes important for the adaptation ofPseudomonas aeruginosato chronically infected host sites

(2012) Piotr Bielecki et al.   ENVIRONMENTAL MICROBIOLOGY

The Multiple Signaling Systems Regulating Virulence in Pseudomonas aeruginosa

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Metabolomics: the apogee of the omics trilogy

(2012) Gary J. Patti et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

CAMERA: An Integrated Strategy for Compound Spectra Extraction and Annotation of Liquid Chromatography/Mass Spectrometry Data Sets

(2011) Carsten Kuhl et al.   ANALYTICAL CHEMISTRY

The Pseudomonas aeruginosa opportunistic pathogen and human infections

(2011) Sophie de Bentzmann et al.   ENVIRONMENTAL MICROBIOLOGY

Simultaneous quantitative profiling of N-acyl-l-homoserine lactone and 2-alkyl-4(1H)-quinolone families of quorum-sensing signaling molecules using LC-MS/MS

(2010) Catharine A. Ortori et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

How Pseudomonas aeruginosa adapts to various environments: a metabolomic approach

(2010) Eliane Frimmersdorf et al.   ENVIRONMENTAL MICROBIOLOGY

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Characterization of the Pseudomonas aeruginosa Transcriptional Response to Phenylalanine and Tyrosine

(2010) G. C. Palmer et al.   JOURNAL OF BACTERIOLOGY

Virulence gene distribution in clinical, nosocomial and environmental isolates of Pseudomonas aeruginosa

(2010) R. S. Bradbury et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Metabolomics to Unveil and Understand Phenotypic Diversity between Pathogen Populations

(2010) Ruben t'Kindt et al.   PLoS Neglected Tropical Diseases

Dynamics of Pseudomonas aeruginosa genome evolution

(2008) K. Mathee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA